PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g026860.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 158aa    MW: 17767.3 Da    PI: 4.4902
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g026860.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.12.5e-091043639
                      HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
            SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                      ++nr+  + k ++ + KKA+ L+vLCd++v ++ 
  Sopen11g026860.1 10 EINRKEILDKKLASLCKKAYDLCVLCDVRVGIVC 43
                      5788888999********************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.363142IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.81E-11979IPR002100Transcription factor, MADS-box
PfamPF003196.8E-81143IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MSATRDLGEE INRKEILDKK LASLCKKAYD LCVLCDVRVG IVCSIPKKPD VFCWPSFTEA  60
QNIVTDYMAD PEHKISMHND LLPSIVTERE EEIRELEETV EKMEMENLFN EILKGNKLLN  120
EVNVGEAKGL LNLIAAKRVQ VDEIAANNNG GEENVGHP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057740.11e-112agamous-like MADS-box protein AGL63
TrEMBLA0A3Q7JP777e-71A0A3Q7JP77_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000950054e-70(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31140.24e-07GORDITA