PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g026970.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 324aa    MW: 35128 Da    PI: 6.7083
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g026970.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.95.3e-3446100155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Sopen11g026970.1  46 KQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 100
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.33743103IPR017930Myb domain
SuperFamilySSF466893.94E-1845100IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-3245101IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-2646101IPR006447Myb domain, plants
PfamPF002491.4E-94899IPR001005SANT/Myb domain
PfamPF143792.9E-22132178IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MYQPKGVPSS SLAHNNAAVN SQSLDCGGGS MDPSSGGNNN SSLASKQRLR WTNELHERFV  60
DAVAQLGGPD RATPKGVLRV MGVQGLTIYH VKSHLQKYRL AKYLPDSSSD GKNSDKKEPR  120
DMLSSLDGSS GVEITTALKL QMEVQKRLHE QLEVQKQLQL RIEAQGKYLK KIIEEQQRLS  180
GVLSEVPGSG VTALPTGDNG PESDNRTDPG TPAPSSESPH VDKPVKAHTS TKSLSMDESF  240
SSHHSPLSPD SDCQETSLME SPNGESSSKK QRVGDVALPH QILESSLSPP YQQPHSVFMM  300
RDQFNHTSGL SLDIEDHKVS GSNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-2446103259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-2446103259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-2446103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-2446103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-2446103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-2446103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-2446103259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-2446103259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-2446103259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-2446103259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-2446103259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-2446103259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015058410.10.0myb family transcription factor PHL7-like
SwissprotQ9SJW01e-113PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A3Q7J0360.0A0A3Q7J036_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000190990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27962451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-96G2-like family protein