PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g027190.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YB
Protein Properties Length: 175aa    MW: 19810.2 Da    PI: 4.5719
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g027190.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB43.86.1e-1426121797
             NF-YB   7 flPianvsrimkkvlP...anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                        lP + v r++k+ l    +++ is  +d+     e +  fi ++++ a+d c++ kr+tin++d++ al ++ f + +eplk+ l+ +re +
  Sopen11g027190.1  26 GLPKTIVRRLVKEKLSqlsTDTDISllRDSLLAFSESARIFIHYLSATANDICKESKRQTINAEDVFKALEEIEFPELIEPLKASLEGFREKN 118
                       578888888888765411156666644677888899*******************************************************88 PP

             NF-YB  95 gek 97 
                       +++
  Sopen11g027190.1 119 SKR 121
                       765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.4E-3117165IPR009072Histone-fold
SuperFamilySSF471133.69E-2426135IPR009072Histone-fold
PfamPF008082.5E-82795IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MAEIEKQNKE KEKVVAETTV QIDQEGLPKT IVRRLVKEKL SQLSTDTDIS LLRDSLLAFS  60
ESARIFIHYL SATANDICKE SKRQTINAED VFKALEEIEF PELIEPLKAS LEGFREKNSK  120
RKSTSSKSPE SNKKAKLKEP VENGKGKMKE QPLDNENEDA QAEEEVNEVD DSVDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_A8e-1171374125DNA polymerase epsilon subunit D
5y27_A8e-1171374125DNA polymerase epsilon subunit D
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-118HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057038.11e-122DNA polymerase epsilon subunit 3
TrEMBLA0A3Q7IZT61e-117A0A3Q7IZT6_SOLLC; Uncharacterized protein
STRINGSolyc11g068480.1.11e-118(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101612427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.13e-30nuclear factor Y, subunit B11