PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen11g027340.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 203aa MW: 23593.8 Da PI: 9.7214

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen11g027340.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	84	3.1e-26	4	77	55	128
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++w+fF++r++++a+g r+ r+t+ gyWkatg+ v+s++++++g+kk++vfykg+ap+g+kt+W m+eyr+ Sopen11g027340.1 4 REQWFFFVPRQEREARGGRPCRTTNCGYWKATGSPSYVYSSNNKVIGVKKSMVFYKGKAPTGKKTKWKMNEYRA 77 579*********************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	31.786	1	103	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-29	2	101	IPR003441	NAC domain
Pfam	PF02365	3.8E-12	7	76	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MGDREQWFFF VPRQEREARG GRPCRTTNCG YWKATGSPSY VYSSNNKVIG VKKSMVFYKG 60 KAPTGKKTKW KMNEYRAIQE EVNSTLSIPK LRHEMSLCRI YVISGSFRAF DRRPIAPTIT 120 REPSKSIINQ GGISMENVTK MEAISSPDEN FFMEEQDYVN LNHNDQIPII NQEININSHN 180 NKRVKSNLHD ETLISGWEQF NWM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-19	1	101	68	163	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-19	1	101	68	163	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-19	1	101	68	163	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-19	1	101	68	163	NO APICAL MERISTEM PROTEIN
3swm_A	2e-19	1	101	71	166	NAC domain-containing protein 19
3swm_B	2e-19	1	101	71	166	NAC domain-containing protein 19
3swm_C	2e-19	1	101	71	166	NAC domain-containing protein 19
3swm_D	2e-19	1	101	71	166	NAC domain-containing protein 19
3swp_A	2e-19	1	101	71	166	NAC domain-containing protein 19
3swp_B	2e-19	1	101	71	166	NAC domain-containing protein 19
3swp_C	2e-19	1	101	71	166	NAC domain-containing protein 19
3swp_D	2e-19	1	101	71	166	NAC domain-containing protein 19
4dul_A	2e-19	1	101	68	163	NAC domain-containing protein 19
4dul_B	2e-19	1	101	68	163	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	0.0	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015057943.1	1e-150	NAC domain-containing protein 90
Swissprot	Q9FMR3	5e-58	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A3Q7IZW1	1e-144	A0A3Q7IZW1_SOLLC; Uncharacterized protein
STRING	Solyc11g068620.1.1	1e-145	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	5e-60	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]