PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g028510.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 175aa    MW: 20279 Da    PI: 5.5088
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g028510.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.24.3e-181260149
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      ++ienk +r+vtfskRr g++KK +ELS LCd     ++fs++++   y
  Sopen11g028510.1 12 EKIENKKKRSVTFSKRRYGLFKKESELSMLCDSPSVTVVFSPDDETSVY 60
                      57****************************************9987666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.306461IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-18463IPR002100Transcription factor, MADS-box
CDDcd002666.76E-23582No hitNo description
SuperFamilySSF554557.59E-21588IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-15626IPR002100Transcription factor, MADS-box
PfamPF003191.1E-191357IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-152641IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-154162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MARLGRRRIR IEKIENKKKR SVTFSKRRYG LFKKESELSM LCDSPSVTVV FSPDDETSVY  60
SIGYPCVNSV LDKFMDVNPP QNLDDTDSLS VYRRNAIREG ALVLMEIEEK SEEEKKRKKR  120
LDTGNSYENL NSSEYQNFIE QIEIGYMEAE QLAIELKERN VPFPYSTFGD ALAPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1519RRRIRIEKIENKKKR
2113120EKKRKKRL
3114118KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057850.11e-125agamous-like MADS-box protein AGL28
RefseqXP_015057851.11e-125agamous-like MADS-box protein AGL28
RefseqXP_027768570.11e-125agamous-like MADS-box protein AGL28
TrEMBLA0A3Q7JPS61e-104A0A3Q7JPS6_SOLLC; Uncharacterized protein
STRINGSolyc11g069770.1.11e-104(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-16AGAMOUS-like 62