PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen11g028980.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 866aa MW: 95700 Da PI: 4.475

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen11g028980.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.9	1.7e-16	17	59	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ +++++ gRt++ +k++w+ Sopen11g028980.1 17 KEAWTQEEELTLIRAHEAHGNK-WAELSKYLP-GRTDNAIKNHWH 59 579*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.44E-19	6	66	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.8E-5	6	24	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.194	12	66	IPR017930	Myb domain
SMART	SM00717	8.9E-16	16	64	IPR001005	SANT/Myb domain
Pfam	PF00249	5.4E-15	17	59	IPR001005	SANT/Myb domain
CDD	cd00167	5.45E-12	19	59	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.5E-18	25	61	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0032875	Biological Process	regulation of DNA endoreduplication
GO:0003677	Molecular Function	DNA binding
GO:0003713	Molecular Function	transcription coactivator activity

Sequence ? help Back to Top
Protein Sequence Length: 866 aa Download sequence Send to blast
MSDLFRWHNH LNPAIKKEAW TQEEELTLIR AHEAHGNKWA ELSKYLPGRT DNAIKNHWHS 60 SVKKKRDSYI ASGLLAQLPT LSNVNHQNQS IPSSSVMLQQ TSEDESVHKE GAELEEVMEC 120 SQRSTLAGCP QSTSDLGNTF VHKRENGGMS MEIVREKDTS SSAAPCPTYY TPAFEDVACS 180 MQEVPSELVD SNSLEQHTFS HDWGNSTGND WQFNMDDFTE FIQESSGHYM QCLNGNENHD 240 MVTNPLQNAM ESGATSNAGN IVEGPYNLNE MFNLNELFDG SRIEYPEVGI PQCSLPETGV 300 NGSGEPADSL IYQSSNNQIP ESGNMAPQNC NDFEASTYQQ FSVPSHFSSE DRSLVFGIAS 360 DQFNYPPLEN PVQESFSSRC DGFICPSEFG SPSNDNGIDN AVLKDHPDYT KDSSRLEEQK 420 DEGALCYDPP RFPSLDTPFL YCDLKQSGSD TQQEYSPLGI RQLMTTSTDC STPLRLWDSP 480 LRADSPDAIL KSAAKTFTGT PSILKKRQRH LVTPLSEKRW EKKLESDLNQ ESFSNMVTEF 540 PRVDDMFDES ANEKASTEDK ENLHPSSGGG RKETGDGVTG LSCIENSERQ LDGGGAHYHK 600 EPHSEYAGAN DAMVKVKQPP GVLVEISTND MLFSPDRFFT KHDRATSLSI KALGNQYARR 660 LEAASSNQAT VSSSSIVCSP DVLGKSQSGA SMQYTTSTAL ENTTENSENV FGADPSNIFG 720 ETPFKISIES PSAWKSPWFT DPLLSSPRYE KELTYEEFAF LLSPGDRSYD AIGLMKQLSE 780 QTAPSIADAR QILGSETPET ILLGRNSKEQ KADENRTLLA SNAMSERRTL DFSECGTPGK 840 GNETTTKFGS NDNVSSPSSY LLKCCR

Sequence ? help Back to Top

Protein Sequence Length: 866 aa Download sequence Send to blast

MSDLFRWHNH LNPAIKKEAW TQEEELTLIR AHEAHGNKWA ELSKYLPGRT DNAIKNHWHS  60
SVKKKRDSYI ASGLLAQLPT LSNVNHQNQS IPSSSVMLQQ TSEDESVHKE GAELEEVMEC  120
SQRSTLAGCP QSTSDLGNTF VHKRENGGMS MEIVREKDTS SSAAPCPTYY TPAFEDVACS  180
MQEVPSELVD SNSLEQHTFS HDWGNSTGND WQFNMDDFTE FIQESSGHYM QCLNGNENHD  240
MVTNPLQNAM ESGATSNAGN IVEGPYNLNE MFNLNELFDG SRIEYPEVGI PQCSLPETGV  300
NGSGEPADSL IYQSSNNQIP ESGNMAPQNC NDFEASTYQQ FSVPSHFSSE DRSLVFGIAS  360
DQFNYPPLEN PVQESFSSRC DGFICPSEFG SPSNDNGIDN AVLKDHPDYT KDSSRLEEQK  420
DEGALCYDPP RFPSLDTPFL YCDLKQSGSD TQQEYSPLGI RQLMTTSTDC STPLRLWDSP  480
LRADSPDAIL KSAAKTFTGT PSILKKRQRH LVTPLSEKRW EKKLESDLNQ ESFSNMVTEF  540
PRVDDMFDES ANEKASTEDK ENLHPSSGGG RKETGDGVTG LSCIENSERQ LDGGGAHYHK  600
EPHSEYAGAN DAMVKVKQPP GVLVEISTND MLFSPDRFFT KHDRATSLSI KALGNQYARR  660
LEAASSNQAT VSSSSIVCSP DVLGKSQSGA SMQYTTSTAL ENTTENSENV FGADPSNIFG  720
ETPFKISIES PSAWKSPWFT DPLLSSPRYE KELTYEEFAF LLSPGDRSYD AIGLMKQLSE  780
QTAPSIADAR QILGSETPET ILLGRNSKEQ KADENRTLLA SNAMSERRTL DFSECGTPGK  840
GNETTTKFGS NDNVSSPSSY LLKCCR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-24	6	68	48	110	B-MYB
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00505	DAP	Transfer from AT5G11510	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	0.0	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027769035.1	0.0	transcription factor MYB3R-1-like isoform X1
Refseq	XP_027769036.1	0.0	transcription factor MYB3R-1-like isoform X1
TrEMBL	A0A3Q7J1B3	0.0	A0A3Q7J1B3_SOLLC; Uncharacterized protein
STRING	Solyc11g071300.1.1	0.0	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	1e-102	myb domain protein 3r-4