PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen11g029480.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

YABBY

Protein Properties

Length: 141aa MW: 16011.2 Da PI: 10.4097

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen11g029480.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	179.2	2.4e-55	2	135	32	170
YABBY 32 fkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqr 124 +++vtvrCGhC+++lsvn+ q+l+ ++ ++l+ ++ + +++++n+k + ++++s+s+ ++ + s + e+ pr+pp irP ekrqr Sopen11g029480.1 2 LTLVTVRCGHCANMLSVNIGSLIQALPLQDV--QKLQRQQYTNVENNSSNYKAYGSSSSSSSKFNRYS--SIVSPENEPRIPP-IRPLEKRQR 89 689***********************996..56666667777777777777766666665555543..5666778899999.9**** PP YABBY 125 vPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 vPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Sopen11g029480.1 90 VPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 135 ******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.6E-55	1	135	IPR006780	YABBY protein
SuperFamily	SSF47095	3.14E-8	78	128	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.2E-5	87	127	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MLTLVTVRCG HCANMLSVNI GSLIQALPLQ DVQKLQRQQY TNVENNSSNY KAYGSSSSSS 60 SKFNRYSSIV SPENEPRIPP IRPLEKRQRV PSAYNRFIKE EIQRIKASNP DISHREAFST 120 AAKNWAHFPH IHFGLKLEGN K

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU557674	0.0	EU557674.1 Solanum lycopersicum FAS protein (fasciated) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015058841.1	1e-101	putative axial regulator YABBY 2
Swissprot	Q9XFB0	5e-53	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	B2YHV8	1e-90	B2YHV8_SOLLC; FAS protein
STRING	Solyc11g071810.1.1	2e-91	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	4e-44	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]