PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen11g029480.2

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

YABBY

Protein Properties

Length: 156aa MW: 17659.1 Da PI: 10.4965

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen11g029480.2	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	177.4	8.7e-55	2	150	32	170
YABBY 32 fkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.........lleelkveeenlksnvekeesastsvssekl..senedeevprvp 113 +++vtvrCGhC+++lsvn+ q+l+ ++ ++++ + l+ ++ ++ en +sn++++ s+s+s s+++ s + e+ pr+p Sopen11g029480.2 2 LTLVTVRCGHCANMLSVNIGSLIQALPLQDVQKKNYIPVgnftisgqkLQRQQYTNVENNSSNYKAYGSSSSSSSKFNRysSIVSPENEPRIP 94 689************************9877777776899888776443443444444444444444444444433344777888999999 PP YABBY 114 pvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 p irP ekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Sopen11g029480.2 95 P-IRPLEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 150 9.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.4E-53	1	150	IPR006780	YABBY protein
SuperFamily	SSF47095	3.93E-8	93	143	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	6.3E-5	102	142	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MLTLVTVRCG HCANMLSVNI GSLIQALPLQ DVQKKNYIPV GNFTISGQKL QRQQYTNVEN 60 NSSNYKAYGS SSSSSSKFNR YSSIVSPENE PRIPPIRPLE KRQRVPSAYN RFIKEEIQRI 120 KASNPDISHR EAFSTAAKNW AHFPHIHFGL KLEGNK

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU557674	1e-166	EU557674.1 Solanum lycopersicum FAS protein (fasciated) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015058841.1	2e-92	putative axial regulator YABBY 2
Swissprot	Q9XFB0	1e-50	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	B2YHV8	3e-86	B2YHV8_SOLLC; FAS protein
STRING	Solyc11g071810.1.1	5e-87	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	3e-42	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]