PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g030000.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARR-B
Protein Properties Length: 407aa    MW: 45278 Da    PI: 8.5666
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g030000.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like65.97e-21228280255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        ++ Wt+ LH++F+ a++ + G  kA+Pk+i e+m+v+gLt+e+v SH QkYR 
  Sopen11g030000.1 228 SQIIWTESLHHAFLVAIHDI-GFSKAVPKKIHEHMNVPGLTRENVSSHWQKYRN 280
                       6789****************.9*******************************6 PP
2Response_reg36.62.4e-1388177190
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                       +l+vdD+ + +++++++l+k +y ++ +++ + +al +l+ k   +Dli+ D+  ++m+G++l + i+++  ++p++ ++a ++e  +l+ l
  Sopen11g030000.1  88 ILVVDDNAAYLQVVAELLKKCNY-QAVAVKYPIDALPKLQIKGdsCDLIVFDVHKSDMNGFKLQEMIAKAF-EIPVLSMSADQKEGAILKGL 177
                       89*********************.666677777888777554446**********************9999.9********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.2E-1784178No hitNo description
SuperFamilySSF521728.4E-1585178IPR011006CheY-like superfamily
SMARTSM004480.005486194IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011019.0787203IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-988178IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.47E-989178No hitNo description
SuperFamilySSF466898.6E-16225284IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-19227280IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.609.2E-21227284IPR009057Homeodomain-like
PfamPF002493.3E-6232279IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MFVASVATEF MADIGHTFDD DGLKQPYYNM FSLMGTEFFD SVGCIISFER MNNINRKGLL  60
NLCRRVIPCL PMEVETHMSS KTAEKISILV VDDNAAYLQV VAELLKKCNY QAVAVKYPID  120
ALPKLQIKGD SCDLIVFDVH KSDMNGFKLQ EMIAKAFEIP VLSMSADQKE GAILKGLKGV  180
SVDDQRDKGL CTVLQEKKGK RAVPGKSAMK QRKRGKDNSG DLVLPTKSQI IWTESLHHAF  240
LVAIHDIGFS KAVPKKIHEH MNVPGLTREN VSSHWQKYRN YLHRVTDASS IIQVPNKNLA  300
SRANQSTIAS GMLVKHRQVH QENFGVQSSV PSSLIHTSTG YLTGNLQHLK NKGKEVEVVL  360
DPVRNFSVFH KVSAMQGLQG IGDLSASSMN QGNDQPHQDM ETEDNLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-145HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015056911.10.0two-component response regulator ORR21-like
RefseqXP_015056914.10.0two-component response regulator ORR21-like
RefseqXP_015056916.10.0two-component response regulator ORR21-like
RefseqXP_015056917.10.0two-component response regulator ORR21-like
RefseqXP_015056918.10.0two-component response regulator ORR21-like
RefseqXP_015056919.10.0two-component response regulator ORR21-like
RefseqXP_027769008.10.0two-component response regulator ORR21-like
RefseqXP_027769009.10.0two-component response regulator ORR21-like
RefseqXP_027769010.10.0two-component response regulator ORR21-like
RefseqXP_027769011.10.0two-component response regulator ORR21-like
RefseqXP_027769012.10.0two-component response regulator ORR21-like
TrEMBLA0A3Q7J1090.0A0A3Q7J109_SOLLC; Uncharacterized protein
STRINGSolyc11g072330.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32902038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-32response regulator 2