PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g030700.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 153aa    MW: 17381.1 Da    PI: 9.4922
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g030700.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000323658123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C+k+F++   L  H  +H
  Sopen11g030700.1 36 FECKTCNKRFPSFQALGGHRASH 58
                      89**********99999998887 PP
2zf-C2H213.10.0002979101123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++Cg  Fs    L  H+r+H
  Sopen11g030700.1  79 HKCSICGVEFSLGQALGGHMRRH 101
                       79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.8473663IPR007087Zinc finger, C2H2
SMARTSM003550.0753658IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-123660IPR007087Zinc finger, C2H2
SuperFamilySSF576674.12E-936101No hitNo description
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-477104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.08879101IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9379106IPR007087Zinc finger, C2H2
PfamPF139122.2E-1079104IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MQIEVEAMAN CALMLLSRFN NNTCSYSSDH HHINDFECKT CNKRFPSFQA LGGHRASHNK  60
KPRLMGEFVV ETNKKNKMHK CSICGVEFSL GQALGGHMRR HRDEINKTTI PVLNKSNSSK  120
RIFCLDLNLT PPHENVVDFK LSPIASPVLR IFI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057903.11e-111zinc finger protein ZAT11-like
SwissprotQ9SLD41e-32ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLM1B9D76e-91M1B9D7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000401431e-91(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.14e-35C2H2 family protein