PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g030720.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 164aa    MW: 18626.6 Da    PI: 9.829
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g030720.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000354769123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C+k+F++   L  H  +H
  Sopen11g030720.1 47 FECKTCNKRFPSFQALGGHRASH 69
                      89**********99999998887 PP
2zf-C2H212.90.0003390112123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++Cg  Fs    L  H+r+H
  Sopen11g030720.1  90 HKCSICGVEFSLGQALGGHMRRH 112
                       79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.2E-124771IPR007087Zinc finger, C2H2
SuperFamilySSF576674.97E-947112No hitNo description
PROSITE profilePS501579.9724774IPR007087Zinc finger, C2H2
SMARTSM003550.0754769IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-488115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.4E-1090115IPR007087Zinc finger, C2H2
PROSITE profilePS501579.9390117IPR007087Zinc finger, C2H2
SMARTSM003550.08890112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MTSMKRSRDE NMQIEVEAMA NCALMLLSRF NNNTCLSSSD HHHINDFECK TCNKRFPSFQ  60
ALGGHRASHN KKPKLMGEFV VETNKKNKMH KCSICGVEFS LGQALGGHMR RHRDEINKTT  120
IPVLTKSNSS KRIFCLDLNL TPPHENVVDF KLSPIASPVL RIFI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057912.11e-119zinc finger protein ZAT11-like
SwissprotQ9LX851e-33ZAT8_ARATH; Zinc finger protein ZAT8
SwissprotQ9SLD42e-33ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLM1B9D71e-98M1B9D7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000401432e-99(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.16e-36C2H2 family protein