PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g002030.3
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 178aa    MW: 20360.1 Da    PI: 8.46
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g002030.3genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.11.5e-101659245
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      +ien  n + +fskRr  + KKA+ L   Cd+++ +i fs+ g+
  Sopen12g002030.3 16 KIENFGNLNASFSKRRMSLYKKASNLVFECDVDIGMIFFSPAGN 59
                      699999***********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-13766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.446767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-18879IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-9929IPR002100Transcription factor, MADS-box
PfamPF003195.4E-151663IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-92944IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-94465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MENKKPKGRR KIPMRKIENF GNLNASFSKR RMSLYKKASN LVFECDVDIG MIFFSPAGNP  60
FSFFHPNVDA VVSRFQNLDI EPSESALLVA AHNREKVNEL KNKLEVLDAI ENIEIAKKQS  120
YDEMINARQK GWWESIEQLN ANEVSTYETW LKTIGFNVHN RLNQMEVGAS SSDLGFNG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769536.11e-130agamous-like MADS-box protein AGL29
TrEMBLM1DMK57e-87M1DMK5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000914281e-87(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-27AGAMOUS-like 29