PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen12g002230.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 158aa MW: 18257.6 Da PI: 9.3468

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen12g002230.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.3	1.9e-29	13	66	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH+ F++ v++LGG +kAtPk+i+++m +kgL ++hvkSHLQ+YR Sopen12g002230.1 13 PRLRWTPQLHHLFIQSVQNLGGRNKATPKRIVQMMAIKGLKISHVKSHLQMYRN 66 9****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.2E-26	12	68	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-13	13	68	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.6E-22	13	66	IPR006447	Myb domain, plants
Pfam	PF00249	4.5E-7	14	65	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MKEVRKYQKS LAPRLRWTPQ LHHLFIQSVQ NLGGRNKATP KRIVQMMAIK GLKISHVKSH 60 LQMYRNMREH PSLHVVMPDF NLSSPMHVSK ILGEHAQNSR KQKESGSQNG ENIHYNDFQE 120 AEGSLSSGMT KEEEEDNDGE IYEYRETSTQ INLDLTLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	14	68	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	14	68	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	14	68	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	14	68	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	14	68	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	14	68	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	14	68	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	14	68	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	14	68	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	14	68	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	14	68	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	14	68	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	2e-64	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027769507.1	1e-115	putative Myb family transcription factor At1g14600
TrEMBL	A0A3Q7JRD0	1e-112	A0A3Q7JRD0_SOLLC; Uncharacterized protein
STRING	Solyc12g006280.1.1	1e-112	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9459	13	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42660.1	8e-25	G2-like family protein