PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g003610.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 282aa    MW: 32096.5 Da    PI: 5.1591
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g003610.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-151462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W++eEd +l+++ ++ G+  +W + +++ g++R++k+c++rw++yl
  Sopen12g003610.1 14 RGPWSPEEDNILKNYLEKNGTSgNWISLPQKAGLRRCGKSCRLRWLNYL 62
                      89******************99*************************97 PP
2Myb_DNA-binding44.63.4e-1469111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +T+eEd +++ + +q G++ W+ Ia+ +  gRt++++k++w++
  Sopen12g003610.1  69 GGFTEEEDNIILTLYRQIGSR-WSVIAANLS-GRTDNDVKNHWNT 111
                       569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.032962IPR017930Myb domain
SuperFamilySSF466892.11E-2612109IPR009057Homeodomain-like
SMARTSM007175.4E-111364IPR001005SANT/Myb domain
PfamPF002493.3E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-231569IPR009057Homeodomain-like
CDDcd001673.72E-81662No hitNo description
PROSITE profilePS5129422.19663117IPR017930Myb domain
SMARTSM007175.1E-1367115IPR001005SANT/Myb domain
PfamPF002492.6E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-2370116IPR009057Homeodomain-like
CDDcd001675.04E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGRAPCCDKT KVKRGPWSPE EDNILKNYLE KNGTSGNWIS LPQKAGLRRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNIIL TLYRQIGSRW SVIAANLSGR TDNDVKNHWN TKLKKKHFAA  120
QNNNLINIGY NFTNNINSSD LNHNYSTNYY GKLDYSNTFT SHMDPNVTNC DQFPLPTLME  180
IQGNDATIQE DSSLDSCQIL QKCVTFEEIS MCPTTFLKNT INTDSNYMNS SSGISSSSSS  240
YYEDILENGF DFQENDIGGV DPNSSYYNNI LEIDQLFKGF EN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24141167107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060900.10.0transcription factor MYB36-like
TrEMBLM0ZHL61e-175M0ZHL6_SOLTU; Uncharacterized protein
STRINGSolyc12g008670.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.13e-69MYB family protein