PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g003980.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YA
Protein Properties Length: 228aa    MW: 25376.3 Da    PI: 9.5965
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g003980.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.61.8e-3291147158
         CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       d p+YVNaKQy++Il+RRq Rakle+++kl  k+rkpylheSRh hA++R RgsgGrF
  Sopen12g003980.1  91 DGPIYVNAKQYHGILRRRQIRAKLEAQNKL-VKNRKPYLHESRHLHAVNRVRGSGGRF 147
                       57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-3589150IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.79890150IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.4E-2493115IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.5E-2893147IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS00686095115IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.4E-24124147IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MTASGKTNSQ DQCASSEYVH DERYGRDMQV QIKPALFSLQ NEVANSTGLS AFGYSDPYIS  60
SLYTAYGPQP YPQMMGIAPT RVPLPVDMAE DGPIYVNAKQ YHGILRRRQI RAKLEAQNKL  120
VKNRKPYLHE SRHLHAVNRV RGSGGRFLSS KKVHQSDPNS YPTNSTSSLD SVEHEGSTSA  180
FSSVRQDVVH NGINFQQQQP DHMAFSVSSH MVITMQGNGT QQHAPVVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-2391160274NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-175HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755241e-175HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015059529.11e-170nuclear transcription factor Y subunit A-5-like isoform X3
TrEMBLM0ZH821e-158M0ZH82_SOLTU; Uncharacterized protein
STRINGSolyc12g009050.1.11e-168(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.11e-41nuclear factor Y, subunit A7