PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g003980.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YA
Protein Properties Length: 283aa    MW: 31495.1 Da    PI: 9.1638
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g003980.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.12.6e-32146202158
         CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       d p+YVNaKQy++Il+RRq Rakle+++kl  k+rkpylheSRh hA++R RgsgGrF
  Sopen12g003980.2 146 DGPIYVNAKQYHGILRRRQIRAKLEAQNKL-VKNRKPYLHESRHLHAVNRVRGSGGRF 202
                       57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-35144205IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.798145205IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-23148170IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-27148202IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860150170IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.2E-23179202IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MVSSNEQETS HNNRKIGLRS EISISLLPGD MKSLDPDLQG ETLRLTHTTL NSQDKMTASG  60
KTNSQDQCAS SEYVHDERYG RDMQVQIKPA LFSLQNEVAN STGLSAFGYS DPYISSLYTA  120
YGPQPYPQMM GIAPTRVPLP VDMAEDGPIY VNAKQYHGIL RRRQIRAKLE AQNKLVKNRK  180
PYLHESRHLH AVNRVRGSGG RFLSSKKVHQ SDPNSYPTNS TSSLDSVEHE GSTSAFSSVR  240
QDVVHNGINF QQQQPDHMAF SVSSHMVITM QGNGTQQHAP VVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-22148215474NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-175HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755241e-175HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015059529.10.0nuclear transcription factor Y subunit A-5-like isoform X3
TrEMBLM0ZH821e-177M0ZH82_SOLTU; Uncharacterized protein
STRINGSolyc12g009050.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50092338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.12e-41nuclear factor Y, subunit A7