PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g004190.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 244aa    MW: 27473.3 Da    PI: 4.2721
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g004190.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.6e-191767155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s y+GVr +k +g+Wv+eIr p++   r r++lg+++t+e+Aaka +aa  +l+g
  Sopen12g004190.1 17 SLYRGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTPEKAAKAFDAALFCLRG 67
                      57*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-201776IPR016177DNA-binding domain
CDDcd000181.69E-281777No hitNo description
PROSITE profilePS5103221.7991875IPR001471AP2/ERF domain
PfamPF008472.3E-111867IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-281876IPR001471AP2/ERF domain
SMARTSM003801.2E-311881IPR001471AP2/ERF domain
PRINTSPR003678.5E-101930IPR001471AP2/ERF domain
PRINTSPR003678.5E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MVKPNSKDTE FSQSSSSLYR GVRKRKWGKW VSEIRLPNSR ERIWLGSYDT PEKAAKAFDA  60
ALFCLRGKGA NFNFPENPPE IMNGRTMTPS EIQSAAAQFA NNTEPELIRV GPRENSDLSS  120
SSSEIFRAES PSVSVSDRVE SEKTEITLGN DFIDMYRVES RVESEKTETS LDNGFMDMFS  180
SLGTVNDMSD FGIFPGFDDL SGEFFIPPQP SPPPQMPNLE SLEEENYLNY DGFQSQGTSF  240
LWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1519761573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060745.11e-178ethylene-responsive transcription factor ERF017
TrEMBLA0A3Q7J3S71e-154A0A3Q7J3S7_SOLLC; Uncharacterized protein
STRINGSolyc12g009240.1.11e-155(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-53ERF family protein