PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen12g005590.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 155aa MW: 17939.7 Da PI: 8.9418

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen12g005590.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18	5e-06	9	57	2	32
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C................... CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.as.................k 32 r ++ +E+ RR++++ f+ L +llP+ +s k Sopen12g005590.1 9 RLEKKYVEKHRRNNMKILFNHLYSLLPPhPSqeamglpgqidasitciK 57 5667889*********************665666666655555555553 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.58E-9	7	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.134	7	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-8	9	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MYSSYSASRL EKKYVEKHRR NNMKILFNHL YSLLPPHPSQ EAMGLPGQID ASITCIKNLE 60 IKLEKSKMQL EKLRTKKRLL NEEGFEVIDS SFSLHGNSKM QIFHETKVIG NSTMVYRKVK 120 ELLNGSSSSD DIIETLLNSW DNQIYSEMLE LINLT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	5e-77	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027769071.1	1e-110	transcription factor bHLH162-like isoform X4
TrEMBL	A0A1U8ED51	1e-56	A0A1U8ED51_CAPAN; uncharacterized protein LOC107841915
STRING	PGSC0003DMT400020215	1e-45	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	1e-10	bHLH family protein