PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g006590.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 168aa    MW: 18944.8 Da    PI: 6.8792
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g006590.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like43.28.9e-1468117251
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                       pr+ Wt++LH++Fv +v+  GG+    P++il+ m   gL+  ++k  LQ
  Sopen12g006590.1  68 PRMLWTEDLHRKFVAVVDAYGGPWAVKPRHILKEMAHLGLSHCQIKNRLQ 117
                       8************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.06E-965119IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.7E-1266117IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-1168119IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDRLAVRGSS QWPWVAPGHF DGQPGDSCEV PRLVKGFVVL HIFPTHQVQQ ELGQQPNNVG  60
STSRVKPPRM LWTEDLHRKF VAVVDAYGGP WAVKPRHILK EMAHLGLSHC QIKNRLQELL  120
KNVDGGKADD DVCVPQLPTE AEKMKAQISP EDAFIEELLN WMIVKQDI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754512e-82HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025884461.14e-79transcription factor HHO6-like
TrEMBLK4DCL05e-75K4DCL0_SOLLC; Uncharacterized protein
STRINGSolyc12g011240.1.18e-76(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14605411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42660.12e-08G2-like family protein