PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g007870.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 219aa    MW: 25090.7 Da    PI: 5.2956
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g007870.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.48.9e-1421481340
                      HHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
            SRF-TF 13 fskRrngilKKAeELSvLCdaevaviif 40
                      + +R + ++KKAeELS+LCd+eva+iif
  Sopen12g007870.1 21 LDRRETSLFKKAEELSILCDIEVAIIIF 48
                      5567888********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-7160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.647148IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-16394IPR002100Transcription factor, MADS-box
PfamPF003195.3E-121551IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MARKRLRDAR NYSENVRNSI LDRRETSLFK KAEELSILCD IEVAIIIFRP GKIQPIAWKS  60
ASLAQDVLTR YLSFIEFKRL EKLVTHEEYL QKKVDKKEEQ ISKLEKLNEA KEMEILFNQL  120
VEGKSINELD AREMKGLLKV FAAKMTKLDE RKKELNQPPN PPSNKENIIL SASPMEESFN  180
NPGFIDTIAT LGDGSDIEPA PKEGNAVNVE DDGHYKDLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060963.11e-158MADS-box transcription factor PHERES 2-like
TrEMBLM1DXN51e-142M1DXN5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000960781e-142(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.12e-18AGAMOUS-like 96