PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen12g015500.2

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

CAMTA

Protein Properties

Length: 973aa MW: 108922 Da PI: 6.6755

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen12g015500.2	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	168.6	9.5e-53	12	127	2	116
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 ++e + rwl++ e++ iL+n++ +l+++++++p sgs++L+n++++ryfrkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+n++ Sopen12g015500.2 12 VQEgRFRWLRPAEVLFILQNHDDRQLAHQPPQKPASGSMFLFNKRVLRYFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEKNSN 104 667799************************************************************************************* PP CG-1 94 fqrrcywlLeeelekivlvhyle 116 fqrr+yw+L+ ++e+ivlvhy++ Sopen12g015500.2 105 FQRRSYWILDPAYEHIVLVHYRD 127 *******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.458	8	134	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	9.8E-72	11	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.1E-47	16	127	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.4E-10	404	492	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	1.8E-10	407	489	IPR002909	IPT domain
CDD	cd00102	2.72E-8	407	491	No hit	No description
SuperFamily	SSF81296	1.4E-19	407	491	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	8.2E-13	604	700	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	12.594	606	698	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.55E-13	610	701	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.89E-12	627	698	No hit	No description
Pfam	PF12796	3.3E-6	627	699	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.885	639	671	IPR002110	Ankyrin repeat
SMART	SM00015	82	756	778	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.291	757	786	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	1.96E-6	759	863	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	6.3	815	837	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.401	816	845	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.014	818	836	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0022	838	860	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.883	840	864	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.3E-5	841	860	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 973 aa Download sequence Send to blast
MAESGYNTND LVQEGRFRWL RPAEVLFILQ NHDDRQLAHQ PPQKPASGSM FLFNKRVLRY 60 FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE KNSNFQRRSY WILDPAYEHI 120 VLVHYRDITE GRQIAAFMSQ SSPISSTFPL SPSLYSTQHP GFNVPGSESY QQYQDESRPG 180 YGEICSDAVI HSNGMNVSDI TRMMEGVSNS PKVEISQALR RLEEQLNLND DSSSEIYSLY 240 SEIENSNDAE NVVHDKSSLV QIQDNSNNFL FLPHSGESSE SRDQLLNLDD SMWKEMLDHC 300 RSSPASQPQA KCFEKLDENG MLQTSSGSEP IEAIKSDRWP IIGGKEALKC SVTNLKQVDD 360 FKYIGCAQIN AFGSYPDQCT TIFDQDQIGI SSETNMSLTI VQKQKFTIHD ISPDWGYASD 420 ATKVVIIGSY LCNPSEYTWT CMFGDTEVPV QIIKDGAIRC QAPPHLPGKV ALCVTTGNRI 480 PCSEVREFEY RAKFDDRGQN VVPEVGGASK SSEELLLLVR FVQMLLSDSS VQIGDGSESN 540 NDILEKSKAS EDSWSQVIGS LLFGTSTSTV TIDWLLQELL KNKLQQWLSS KLQVKNNEMV 600 YSLSRKDQGI VHMIAGLGFE WALHPVLNAG VSANFRDIRG WTALHWAARF GREKMVASLI 660 ASGAFAGAVT DPSSQDPFGK TAASIASSCG HKGVAGYLSE VALTSHLTSL TLEECDVSKG 720 TADIEAEQTI SNITTTSPVT HEDQLSLKDT LDAVRNAAQA AARIQSAFRA HSFRKRRLRE 780 AAHVATTCRD EYCILSNDVL GLSAASKLAF RNVRDYNSAA LSIQRKYRGW KGRKDFLVFR 840 QKVVKIQAHV RGYQVRKEYK VCWAVGILEK VVLRWRRRGV GLRGFRLEDE PIEESENEDI 900 LKLFRKQKVD AAINEAVSRV LLMVDSPEAR QQYRRILEKY RQAKAEVAGA KSDAISTAHS 960 DISNVENNDV YHS

Sequence ? help Back to Top

Protein Sequence Length: 973 aa Download sequence Send to blast

MAESGYNTND LVQEGRFRWL RPAEVLFILQ NHDDRQLAHQ PPQKPASGSM FLFNKRVLRY  60
FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE KNSNFQRRSY WILDPAYEHI  120
VLVHYRDITE GRQIAAFMSQ SSPISSTFPL SPSLYSTQHP GFNVPGSESY QQYQDESRPG  180
YGEICSDAVI HSNGMNVSDI TRMMEGVSNS PKVEISQALR RLEEQLNLND DSSSEIYSLY  240
SEIENSNDAE NVVHDKSSLV QIQDNSNNFL FLPHSGESSE SRDQLLNLDD SMWKEMLDHC  300
RSSPASQPQA KCFEKLDENG MLQTSSGSEP IEAIKSDRWP IIGGKEALKC SVTNLKQVDD  360
FKYIGCAQIN AFGSYPDQCT TIFDQDQIGI SSETNMSLTI VQKQKFTIHD ISPDWGYASD  420
ATKVVIIGSY LCNPSEYTWT CMFGDTEVPV QIIKDGAIRC QAPPHLPGKV ALCVTTGNRI  480
PCSEVREFEY RAKFDDRGQN VVPEVGGASK SSEELLLLVR FVQMLLSDSS VQIGDGSESN  540
NDILEKSKAS EDSWSQVIGS LLFGTSTSTV TIDWLLQELL KNKLQQWLSS KLQVKNNEMV  600
YSLSRKDQGI VHMIAGLGFE WALHPVLNAG VSANFRDIRG WTALHWAARF GREKMVASLI  660
ASGAFAGAVT DPSSQDPFGK TAASIASSCG HKGVAGYLSE VALTSHLTSL TLEECDVSKG  720
TADIEAEQTI SNITTTSPVT HEDQLSLKDT LDAVRNAAQA AARIQSAFRA HSFRKRRLRE  780
AAHVATTCRD EYCILSNDVL GLSAASKLAF RNVRDYNSAA LSIQRKYRGW KGRKDFLVFR  840
QKVVKIQAHV RGYQVRKEYK VCWAVGILEK VVLRWRRRGV GLRGFRLEDE PIEESENEDI  900
LKLFRKQKVD AAINEAVSRV LLMVDSPEAR QQYRRILEKY RQAKAEVAGA KSDAISTAHS  960
DISNVENNDV YHS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN566047	0.0	JN566047.1 Solanum lycopersicum calmodulin-binding transcription factor SR2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015061240.1	0.0	calmodulin-binding transcription activator 4-like isoform X1
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	H8ZRY2	0.0	H8ZRY2_SOLLC; Calmodulin-binding transcription factor SR2
STRING	Solyc12g035520.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3932	20	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]