PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen12g015500.3

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

CAMTA

Protein Properties

Length: 970aa MW: 108581 Da PI: 6.6099

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen12g015500.3	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	168.6	9.5e-53	12	127	2	116
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 ++e + rwl++ e++ iL+n++ +l+++++++p sgs++L+n++++ryfrkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+n++ Sopen12g015500.3 12 VQEgRFRWLRPAEVLFILQNHDDRQLAHQPPQKPASGSMFLFNKRVLRYFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEKNSN 104 667799************************************************************************************* PP CG-1 94 fqrrcywlLeeelekivlvhyle 116 fqrr+yw+L+ ++e+ivlvhy++ Sopen12g015500.3 105 FQRRSYWILDPAYEHIVLVHYRD 127 *******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.424	8	134	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	9.8E-72	11	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.1E-47	16	127	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.3E-10	401	489	IPR013783	Immunoglobulin-like fold
CDD	cd00102	2.71E-8	404	488	No hit	No description
Pfam	PF01833	1.8E-10	404	486	IPR002909	IPT domain
SuperFamily	SSF81296	1.4E-19	404	488	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	8.2E-13	601	697	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	12.594	603	695	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.55E-13	607	698	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	3.3E-6	624	696	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.87E-12	624	695	No hit	No description
PROSITE profile	PS50088	9.885	636	668	IPR002110	Ankyrin repeat
SMART	SM00015	82	753	775	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.291	754	783	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	1.89E-6	756	860	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	6.3	812	834	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.401	813	842	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.014	815	833	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0022	835	857	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.883	837	861	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.3E-5	838	857	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 970 aa Download sequence Send to blast
MAESGYNTND LVQEGRFRWL RPAEVLFILQ NHDDRQLAHQ PPQKPASGSM FLFNKRVLRY 60 FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE KNSNFQRRSY WILDPAYEHI 120 VLVHYRDITE IAAFMSQSSP ISSTFPLSPS LYSTQHPGFN VPGSESYQQY QDESRPGYGE 180 ICSDAVIHSN GMNVSDITRM MEGVSNSPKV EISQALRRLE EQLNLNDDSS SEIYSLYSEI 240 ENSNDAENVV HDKSSLVQIQ DNSNNFLFLP HSGESSESRD QLLNLDDSMW KEMLDHCRSS 300 PASQPQAKCF EKLDENGMLQ TSSGSEPIEA IKSDRWPIIG GKEALKCSVT NLKQVDDFKY 360 IGCAQINAFG SYPDQCTTIF DQDQIGISSE TNMSLTIVQK QKFTIHDISP DWGYASDATK 420 VVIIGSYLCN PSEYTWTCMF GDTEVPVQII KDGAIRCQAP PHLPGKVALC VTTGNRIPCS 480 EVREFEYRAK FDDRGQNVVP EVGGASKSSE ELLLLVRFVQ MLLSDSSVQI GDGSESNNDI 540 LEKSKASEDS WSQVIGSLLF GTSTSTVTID WLLQELLKNK LQQWLSSKLQ VKNNEMVYSL 600 SRKDQGIVHM IAGLGFEWAL HPVLNAGVSA NFRDIRGWTA LHWAARFGRE KMVASLIASG 660 AFAGAVTDPS SQDPFGKTAA SIASSCGHKG VAGYLSEVAL TSHLTSLTLE ECDVSKGTAD 720 IEAEQTISNI TTTSPVTHED QLSLKDTLDA VRNAAQAAAR IQSAFRAHSF RKRRLREAAH 780 VATTCRDEYC ILSNDVLGLS AASKLAFRNV RDYNSAALSI QRKYRGWKGR KDFLVFRQKV 840 VKIQAHVRGY QVRKEYKVCW AVGILEKVVL RWRRRGVGLR GFRLEDEPIE ESENEDILKL 900 FRKQKVDAAI NEAVSRVLLM VDSPEARQQY RRILEKYRQA KAEVAGAKSD AISTAHSDIS 960 NVENNDVYHS

Sequence ? help Back to Top

Protein Sequence Length: 970 aa Download sequence Send to blast

MAESGYNTND LVQEGRFRWL RPAEVLFILQ NHDDRQLAHQ PPQKPASGSM FLFNKRVLRY  60
FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE KNSNFQRRSY WILDPAYEHI  120
VLVHYRDITE IAAFMSQSSP ISSTFPLSPS LYSTQHPGFN VPGSESYQQY QDESRPGYGE  180
ICSDAVIHSN GMNVSDITRM MEGVSNSPKV EISQALRRLE EQLNLNDDSS SEIYSLYSEI  240
ENSNDAENVV HDKSSLVQIQ DNSNNFLFLP HSGESSESRD QLLNLDDSMW KEMLDHCRSS  300
PASQPQAKCF EKLDENGMLQ TSSGSEPIEA IKSDRWPIIG GKEALKCSVT NLKQVDDFKY  360
IGCAQINAFG SYPDQCTTIF DQDQIGISSE TNMSLTIVQK QKFTIHDISP DWGYASDATK  420
VVIIGSYLCN PSEYTWTCMF GDTEVPVQII KDGAIRCQAP PHLPGKVALC VTTGNRIPCS  480
EVREFEYRAK FDDRGQNVVP EVGGASKSSE ELLLLVRFVQ MLLSDSSVQI GDGSESNNDI  540
LEKSKASEDS WSQVIGSLLF GTSTSTVTID WLLQELLKNK LQQWLSSKLQ VKNNEMVYSL  600
SRKDQGIVHM IAGLGFEWAL HPVLNAGVSA NFRDIRGWTA LHWAARFGRE KMVASLIASG  660
AFAGAVTDPS SQDPFGKTAA SIASSCGHKG VAGYLSEVAL TSHLTSLTLE ECDVSKGTAD  720
IEAEQTISNI TTTSPVTHED QLSLKDTLDA VRNAAQAAAR IQSAFRAHSF RKRRLREAAH  780
VATTCRDEYC ILSNDVLGLS AASKLAFRNV RDYNSAALSI QRKYRGWKGR KDFLVFRQKV  840
VKIQAHVRGY QVRKEYKVCW AVGILEKVVL RWRRRGVGLR GFRLEDEPIE ESENEDILKL  900
FRKQKVDAAI NEAVSRVLLM VDSPEARQQY RRILEKYRQA KAEVAGAKSD AISTAHSDIS  960
NVENNDVYHS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN566047	0.0	JN566047.1 Solanum lycopersicum calmodulin-binding transcription factor SR2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015061241.1	0.0	calmodulin-binding transcription activator 4-like isoform X3
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	H8ZRY2	0.0	H8ZRY2_SOLLC; Calmodulin-binding transcription factor SR2
STRING	Solyc12g035520.1.1	0.0	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]