PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g016540.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 169aa    MW: 19864.6 Da    PI: 7.0764
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g016540.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185e-067397126
                      --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                      yk + C  f++  tCk G++C++aHg
  Sopen12g016540.1 73 YKIRMCAMFLK-ETCKNGENCTYAHG 97
                      56667777777.79***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.9E-1368105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-969103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3477299IPR000571Zinc finger, CCCH-type
SMARTSM003560.277298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6126154IPR000571Zinc finger, CCCH-type
SMARTSM003562.4126153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311126154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-5127153IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MSFADGDAEG VWPHSSMNYD LFESNFQFEH APLLKRLTNS DNYLPNSISF PTIKSRLNSP  60
NLQESKGISH IFYKIRMCAM FLKETCKNGE NCTYAHGVED LREPPPNWHD LLCVMDRELN  120
EDKEKMHRMK ICKIFYDGEE CPYGHKCKFH HEHHPNLRET CKRTGRVLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169359.15e-94PREDICTED: zinc finger CCCH domain-containing protein 39-like
TrEMBLM1DTT33e-95M1DTT3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000942786e-96(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.17e-28C3H family protein