PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g022340.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 374aa    MW: 42758.8 Da    PI: 4.661
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g022340.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.21.2e-14137221286
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       W+++e+  L++a   +  r +r++l+   W+ev++++ r  ++er+ +qC+++++ l+k+ykk+k    +    ++s+++yf++++
  Sopen12g022340.1 137 WSENETFILLDAWGTRFVRHGRKSLRSEEWQEVADRVsRGSKIERTDTQCRNRLDTLKKKYKKEKMKFAET-GSNTSKWVYFKKMD 221
                       *************************************566788**********************999985.666679*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.214135194IPR017877Myb-like domain
PfamPF138377.0E-21136223No hitNo description
Gene3DG3DSA:1.10.10.602.5E-4137202IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDDIEDNGRY PSNPYGMNQG YESSNRQKLP VHDPSYSRHV DNQYVEEADD DEEVDGEEEE  60
EDDDGEENGV QRIGKDVFDD DDDDDDEYGD SQRHQKKRKL KSLLSSYEFA PRVPPPSTTA  120
ATAPKPSFGG RNPLSDWSEN ETFILLDAWG TRFVRHGRKS LRSEEWQEVA DRVSRGSKIE  180
RTDTQCRNRL DTLKKKYKKE KMKFAETGSN TSKWVYFKKM DMLLTSTPQK AGVSCGMDSG  240
EYVFMSPKAY LNRANGLDEM RDSPANSESA DGEDGSEDLP PKRSRNVQPG GNGNGNGHSF  300
KLIADSIHKF SEIYVKIENS KRQQMMELEK MRMDFHRELE LQKRQIMERA QAEIARIRQG  360
SDEENDMSAE NVSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015061247.10.0trihelix transcription factor ASIL1-like
TrEMBLA0A0V0ISR20.0A0A0V0ISR2_SOLCH; Putative ovule protein
STRINGSolyc12g043090.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72302431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.14e-67Trihelix family protein