PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g023780.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 353aa    MW: 39856.3 Da    PI: 7.8572
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g023780.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-151461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+ Ed++l d++k +G g W+  ++  g++R++k+c++rw++yl
  Sopen12g023780.1 14 KGAWTPLEDKILMDYIKVHGEGKWRNLPKGAGLKRCGKSCRLRWLNYL 61
                      79********************************************97 PP
2Myb_DNA-binding50.74.2e-1667110146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
  Sopen12g023780.1  67 RGNISPDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                       7899******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-23564IPR009057Homeodomain-like
PROSITE profilePS5129415.995961IPR017930Myb domain
SuperFamilySSF466893.82E-2812108IPR009057Homeodomain-like
SMARTSM007171.1E-111363IPR001005SANT/Myb domain
PfamPF002491.3E-131461IPR001005SANT/Myb domain
CDDcd001675.28E-91661No hitNo description
PROSITE profilePS5129424.25862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.8E-2465116IPR009057Homeodomain-like
SMARTSM007172.8E-1566114IPR001005SANT/Myb domain
PfamPF002491.6E-1467110IPR001005SANT/Myb domain
CDDcd001671.98E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGRKPCCSKE GLNKGAWTPL EDKILMDYIK VHGEGKWRNL PKGAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGRRLQEGT  120
HSGQSNRVIS SNRQRHRSSH AKSTIPNDQE HASPRDSQYL LTDIRQGGSL SSSSPCLVVH  180
TKAIRCTKAF MSPTTSNSVV DTHETTEHDN HHKVMTEENM TTNILTPSSS SFSISSLSEQ  240
VSQQQQQQQP VSESYSPTNL SVELENYNFN FMFGFDVDDP FLAELLNAPD LRDQILENST  300
TTSSTIVNGA INNSNKNERQ RSYFPSSSSQ IAIFSEETQH NDLELWINGF SSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060828.10.0myb-related protein 308-like
TrEMBLA0A3Q7JB770.0A0A3Q7JB77_SOLLC; Uncharacterized protein
STRINGSolyc12g049300.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.17e-63myb domain protein 3