PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g025810.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24853.4 Da    PI: 5.2609
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g025810.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.76.3e-131648840
                      HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
            SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviif 40
                       r+  + kR + ++KKAeELS+ Cd+eva+iif
  Sopen12g025810.1 16 VRTSILDKRVASLFKKAEELSIVCDVEVAIIIF 48
                      5666688*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.839148IPR002100Transcription factor, MADS-box
SMARTSM004325.6E-4160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-161294IPR002100Transcription factor, MADS-box
PfamPF003192.2E-121351IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MATKRLRDTP NYNENVRTSI LDKRVASLFK KAEELSIVCD VEVAIIIFRP GKIQPITWKS  60
PSLAQDVLTR YLSFIEFKRL SKLVTHEDYI QKKVDKKEEQ ISKLEKMNEA KEMEILFTQL  120
VEGKSIDELD ARELKGLLKL FAAKMAKLDE RKKELNQAPN PPSNKENITL SASPMEDSFN  180
DPWFIQNIAT LGDGSGVESA QKEGNAVNVE DDGHSKDLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015061036.11e-160MADS-box protein AGL24-like
TrEMBLM1DXN51e-139M1DXN5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000960781e-140(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.11e-15AGAMOUS-like 96