PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g029430.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 140aa    MW: 16707.8 Da    PI: 9.9885
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g029430.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.12.7e-2657116159
                       ---SS-EEEEEEE--TT-.SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgs.efprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYG+K+vk++ ++ r+YY+C+ +gC+ kk+ver+ +d +++++tYeg+Hnhe
  Sopen12g029430.1  57 LDDGYKWRKYGKKKVKSNqKYLRNYYKCSIRGCMIKKRVERDGHDSSYLITTYEGKHNHE 116
                       59**************873689*************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-2745116IPR003657WRKY domain
SuperFamilySSF1182901.09E-2350117IPR003657WRKY domain
PROSITE profilePS5081124.8852118IPR003657WRKY domain
SMARTSM007744.4E-2857117IPR003657WRKY domain
PfamPF031066.8E-2158116IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MTQDYSYNGS SSNSYYATPP NMNHLKEKSK EGIIKKEIKN NERHVIALRT KTQLEILDDG  60
YKWRKYGKKK VKSNQKYLRN YYKCSIRGCM IKKRVERDGH DSSYLITTYE GKHNHEIYSS  120
IIYNHTEVNS EFELNFHRGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-2446117373WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-101HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060174.12e-99probable WRKY transcription factor 51
TrEMBLA0A3Q7JC602e-95A0A3Q7JC60_SOLLC; Uncharacterized protein
STRINGSolyc12g056750.1.13e-96(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA141921013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.12e-22WRKY DNA-binding protein 51