PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g029840.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MIKC_MADS
Protein Properties Length: 205aa    MW: 23654.3 Da    PI: 8.843
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g029840.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.92e-26959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      kri++k  rqv f+kRr+g+lKKA+E+SvLCd++vav+i+s++g+l+e+ss
  Sopen12g029840.1  9 KRIQDKNCRQVAFCKRRKGLLKKAKEISVLCDVDVAVVIISNRGRLHEFSS 59
                      79***********************************************96 PP
2K-box33.61.6e-121001692998
             K-box  29 enLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       e Lq++ R+l   + + L++ +L +Le++L+++l + Rs+K++llle+ + l +kek lqee+k L  ++
  Sopen12g029840.1 100 ELLQTTERQLEETNDDVLTVTDLIHLENELQTALIQLRSRKTHLLLESAKGLHEKEKLLQEEKKHLVDNI 169
                       67999999999999999************************************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.707161IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-32160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-28278IPR002100Transcription factor, MADS-box
CDDcd002655.51E-31276No hitNo description
PRINTSPR004041.0E-23323IPR002100Transcription factor, MADS-box
PfamPF003198.7E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-233859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.3685175IPR002487Transcription factor, K-box
PfamPF014861.8E-9100168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGRRKVEIKR IQDKNCRQVA FCKRRKGLLK KAKEISVLCD VDVAVVIISN RGRLHEFSSN  60
NSLTEMLQRY KSHIEAEKEI STEIQVAEHS KYSGFITMGE LLQTTERQLE ETNDDVLTVT  120
DLIHLENELQ TALIQLRSRK THLLLESAKG LHEKEKLLQE EKKHLVDNIA SIKKNTKVNE  180
MSTDFADFPA PHMIFGQQKI TLNFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-15184184Myocyte-specific enhancer factor 2B
1tqe_Q2e-15184184Myocyte-specific enhancer factor 2B
1tqe_R2e-15184184Myocyte-specific enhancer factor 2B
1tqe_S2e-15184184Myocyte-specific enhancer factor 2B
6c9l_A2e-15184184Myocyte-specific enhancer factor 2B
6c9l_B2e-15184184Myocyte-specific enhancer factor 2B
6c9l_C2e-15184184Myocyte-specific enhancer factor 2B
6c9l_D2e-15184184Myocyte-specific enhancer factor 2B
6c9l_E2e-15184184Myocyte-specific enhancer factor 2B
6c9l_F2e-15184184Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754512e-98HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060177.11e-149protein MADS AFFECTING FLOWERING 5-like
TrEMBLA0A0V0HME91e-133A0A0V0HME9_SOLCH; Uncharacterized protein
STRINGSolyc12g087830.1.11e-107(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65070.12e-30MIKC_MADS family protein