PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g029850.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MIKC_MADS
Protein Properties Length: 198aa    MW: 22570.1 Da    PI: 8.655
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g029850.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF831.9e-26959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      kri++k  rqv f+kRr+g+lKKA+E+SvLCd++vav+i+s++g+l+e+ss
  Sopen12g029850.2  9 KRIQDKNCRQVAFCKRRKGLLKKAKEISVLCDVDVAVVIISNRGRLHEFSS 59
                      79***********************************************96 PP
2K-box43.81.1e-15811671399
             K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       +ae    e++      e Lq++ R+l   + + L++ +L +Le++L+++l + R++K++l+le+ + l +kek lqee+k L+ +++
  Sopen12g029850.2  81 NAEIQVAEVSGFTTMGELLQTTERQLEETNADGLTVTDLIHLENELQTALIHLRARKTHLMLESAKVLHEKEKLLQEEKKHLEDNIA 167
                       555556677777888899****************************************************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.707161IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-32160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.72E-28279IPR002100Transcription factor, MADS-box
CDDcd002651.38E-31276No hitNo description
PRINTSPR004049.3E-24323IPR002100Transcription factor, MADS-box
PfamPF003198.2E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.20582172IPR002487Transcription factor, K-box
PfamPF014865.6E-1286166IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0010048Biological Processvernalization response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGRRKVEIKR IQDKNCRQVA FCKRRKGLLK KAKEISVLCD VDVAVVIISN RGRLHEFSSN  60
NSLTGMLQRY ESHVGAEKEI NAEIQVAEVS GFTTMGELLQ TTERQLEETN ADGLTVTDLI  120
HLENELQTAL IHLRARKTHL MLESAKVLHE KEKLLQEEKK HLEDNIASIK KNTKVNEMSD  180
LPAPHMICGQ QKVTLNFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-15184184Myocyte-specific enhancer factor 2B
1tqe_Q1e-15184184Myocyte-specific enhancer factor 2B
1tqe_R1e-15184184Myocyte-specific enhancer factor 2B
1tqe_S1e-15184184Myocyte-specific enhancer factor 2B
5f28_A9e-16184184MEF2C
5f28_B9e-16184184MEF2C
5f28_C9e-16184184MEF2C
5f28_D9e-16184184MEF2C
6c9l_A1e-15184184Myocyte-specific enhancer factor 2B
6c9l_B1e-15184184Myocyte-specific enhancer factor 2B
6c9l_C1e-15184184Myocyte-specific enhancer factor 2B
6c9l_D1e-15184184Myocyte-specific enhancer factor 2B
6c9l_E1e-15184184Myocyte-specific enhancer factor 2B
6c9l_F1e-15184184Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754512e-98HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060179.11e-143agamous-like MADS-box protein AGL70 isoform X2
TrEMBLA0A0V0HMB71e-131A0A0V0HMB7_SOLCH; Putative agamous-like MADS-box protein AGL27-like
STRINGSolyc12g087830.1.11e-126(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65060.12e-32MIKC_MADS family protein