PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g031050.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 85aa    MW: 9937.02 Da    PI: 4.9255
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g031050.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.1e-10451147
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      +  WT eE + + +a + + ++   +W+ +a+  g  +t++++k+++qk+
  Sopen12g031050.1  4 KSTWTREENKMFENALAIFDKDthdRWSNVAKATG--KTEEEVKLHYQKL 51
                      578*******************************8..9**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.259152IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.7E-6353IPR009057Homeodomain-like
SMARTSM007173.0E-9354IPR001005SANT/Myb domain
SuperFamilySSF466891.0E-13459IPR009057Homeodomain-like
PfamPF002499.9E-8451IPR001005SANT/Myb domain
CDDcd001672.57E-5652No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MATKSTWTRE ENKMFENALA IFDKDTHDRW SNVAKATGKT EEEVKLHYQK LVEDIENIEA  60
DLVPLPKYNE VSVDHDNKTR TTNKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-22268673RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-139HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060923.11e-56protein RADIALIS-like 5
SwissprotQ8GW754e-25RADL5_ARATH; Protein RADIALIS-like 5
TrEMBLA0A3Q7JDX52e-45A0A3Q7JDX5_SOLLC; Uncharacterized protein
STRINGSolyc12g089170.1.14e-54(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19510.12e-27RAD-like 5