PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen12g034010.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

CAMTA

Protein Properties

Length: 910aa MW: 103231 Da PI: 7.1063

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen12g034010.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	160.8	2.6e-50	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 +e k rwl+++ei+aiL n++ +++ ++ + pksg+++L++rk++r+fr+DGy+wkkkkdgktv+E+he+LKvg+ e +++yYah+e+n+tf Sopen12g034010.1 30 EEsKMRWLRPNEIHAILCNHKYFNINVKPVNLPKSGTIVLFDRKMLRNFRRDGYNWKKKKDGKTVKEAHEHLKVGNDERIHVYYAHGEDNTTF 122 44499************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylevk 118 rrcywlL+++le++vlvhy+e++ Sopen12g034010.1 123 VRRCYWLLDKTLEHVVLVHYRETQ 146 *******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	74.906	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.2E-73	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.3E-45	32	144	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.5E-5	354	456	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	1.82E-12	367	454	IPR014756	Immunoglobulin E-set
Pfam	PF12796	4.1E-7	552	632	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.36E-16	552	662	No hit	No description
Gene3D	G3DSA:1.25.40.20	7.8E-17	552	666	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.04E-18	553	667	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.698	561	674	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.701	603	635	IPR002110	Ankyrin repeat
SMART	SM00248	1.8E-6	603	632	IPR002110	Ankyrin repeat
SMART	SM00015	14	765	787	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.236	766	795	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.1	768	786	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0021	788	810	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.017	789	813	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.0E-4	790	810	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	25	864	886	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.37	865	894	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 910 aa Download sequence Send to blast
MESSVSGRLL GCEIHGFRTM QDLDIPNIME ESKMRWLRPN EIHAILCNHK YFNINVKPVN 60 LPKSGTIVLF DRKMLRNFRR DGYNWKKKKD GKTVKEAHEH LKVGNDERIH VYYAHGEDNT 120 TFVRRCYWLL DKTLEHVVLV HYRETQEVSS NSTVAQGSPA APVSSGSALS DPADLSASWV 180 LSGELDSAVD QQYSASRHAH LEPNRDMTVQ NHEQRLLEIN TLEWDDLLAP GDPNKMVATQ 240 QAGGKTAYVQ HTSYEQRNLC ELNGYSLDGG VSSSLERIST FNNSNEITFQ TVDGQMTSSF 300 EKNESGVMTV STGDSLDSLN QDRLQTQDSF GRWMNYLIKD SPESIDDPTP ESSVSTGQSY 360 ASEQIFNITE ILPAWAPSTE ETKICVIGQF HGEQSHLESS SLHCVCGDAC FPAEVLQPGV 420 YRCIVSPQTP GLVNIYLSFD GNKPISQVMS FEFRAPSVHV WTEPPENKSD WDEFRNQMRL 480 AHLLFSTSKS LNILSSKIHQ DLLKDAKKFA GKCSHIIDDW ACLIKSIEDK KVSVPRAKDC 540 LFELSLKTRL QEWLLERVVE GCKISEHDEQ GQGVIHLCAI LGYTWAVYPF SWSGLSLDYR 600 DKYGWTALHW AAYYGREKMV ATLLSAGAKP NLVTDPTSEN LGGCTASDLA SKNGHEGLGA 660 YLAEKALVAQ FKDMTLAGNI SGSLQTTTES INPGNFTEEE LNLKDSLAAY RTAADAAARI 720 QAAFRERALK VRTKAVESSN PEMEARNIIA AMKIQHAFRN YEMQKQLAAA ARIQYRFRTW 780 KMRKEFLHMR RQAIKIQAVF RGFQVRRHYR KIIWSVGVLE KALFRWRLKR KGLRGLKLQS 840 SQVIKPDDVE EDFFQASRKQ AEERIERSVV RVQAMFRSKQ AQEQYRRMKL EHDKATLEYE 900 GTLNPDTEMD

Sequence ? help Back to Top

Protein Sequence Length: 910 aa Download sequence Send to blast

MESSVSGRLL GCEIHGFRTM QDLDIPNIME ESKMRWLRPN EIHAILCNHK YFNINVKPVN  60
LPKSGTIVLF DRKMLRNFRR DGYNWKKKKD GKTVKEAHEH LKVGNDERIH VYYAHGEDNT  120
TFVRRCYWLL DKTLEHVVLV HYRETQEVSS NSTVAQGSPA APVSSGSALS DPADLSASWV  180
LSGELDSAVD QQYSASRHAH LEPNRDMTVQ NHEQRLLEIN TLEWDDLLAP GDPNKMVATQ  240
QAGGKTAYVQ HTSYEQRNLC ELNGYSLDGG VSSSLERIST FNNSNEITFQ TVDGQMTSSF  300
EKNESGVMTV STGDSLDSLN QDRLQTQDSF GRWMNYLIKD SPESIDDPTP ESSVSTGQSY  360
ASEQIFNITE ILPAWAPSTE ETKICVIGQF HGEQSHLESS SLHCVCGDAC FPAEVLQPGV  420
YRCIVSPQTP GLVNIYLSFD GNKPISQVMS FEFRAPSVHV WTEPPENKSD WDEFRNQMRL  480
AHLLFSTSKS LNILSSKIHQ DLLKDAKKFA GKCSHIIDDW ACLIKSIEDK KVSVPRAKDC  540
LFELSLKTRL QEWLLERVVE GCKISEHDEQ GQGVIHLCAI LGYTWAVYPF SWSGLSLDYR  600
DKYGWTALHW AAYYGREKMV ATLLSAGAKP NLVTDPTSEN LGGCTASDLA SKNGHEGLGA  660
YLAEKALVAQ FKDMTLAGNI SGSLQTTTES INPGNFTEEE LNLKDSLAAY RTAADAAARI  720
QAAFRERALK VRTKAVESSN PEMEARNIIA AMKIQHAFRN YEMQKQLAAA ARIQYRFRTW  780
KMRKEFLHMR RQAIKIQAVF RGFQVRRHYR KIIWSVGVLE KALFRWRLKR KGLRGLKLQS  840
SQVIKPDDVE EDFFQASRKQ AEERIERSVV RVQAMFRSKQ AQEQYRRMKL EHDKATLEYE  900
GTLNPDTEMD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN566051	0.0	JN566051.1 Solanum lycopersicum calmodulin-binding transcription factor SR3L mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015059393.1	0.0	calmodulin-binding transcription activator 6 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	H8ZRY6	0.0	H8ZRY6_SOLLC; Calmodulin-binding transcription factor SR3L
STRING	Solyc12g099340.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4565	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]