PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g034050.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARR-B
Protein Properties Length: 552aa    MW: 62321.6 Da    PI: 5.148
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g034050.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like68.31.3e-21195248155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       k+r  W++eLH++F+eav+   G++kA+Pk+ile m+v gL +e+++SHLQk+Rl
  Sopen12g034050.1 195 KARTTWSTELHRKFLEAVDFY-GINKAVPKKILERMNVAGLKREQIASHLQKHRL 248
                       689****************99.********************************7 PP
2Response_reg80.27e-27221301109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       +l+vdD+ + +++l+q l+k +y ev+++  +e+al ll++++  ++l+++D+ mp+mdG+ellk+i+ e  +lp+++++a ++ + a +++ 
  Sopen12g034050.1  22 LLVVDDDTFYLNNLEQTLKKCQY-EVTTCNRAEDALSLLRDNKnnFHLVIIDVHMPDMDGFELLKHIALEM-NLPVVMMSADDSRSVAMKCVI 112
                       599********************.***************777777**********************9866.9******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga+ +l Kp+++e l +
  Sopen12g034050.1 113 DGAHYCLIKPVSMESLQN 130
                       ************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.41E-3219140IPR011006CheY-like superfamily
SMARTSM004483.8E-2720132IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.1E-3620174No hitNo description
PROSITE profilePS5011038.53421136IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.03E-2623135No hitNo description
PfamPF000728.0E-2323130IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466893.58E-17192252IPR009057Homeodomain-like
PROSITE profilePS5129411.136192251IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-21194251IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-21195250IPR006447Myb domain, plants
PfamPF002493.0E-6197247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MSTSGACMNS GEFSGEFPTF RLLVVDDDTF YLNNLEQTLK KCQYEVTTCN RAEDALSLLR  60
DNKNNFHLVI IDVHMPDMDG FELLKHIALE MNLPVVMMSA DDSRSVAMKC VIDGAHYCLI  120
KPVSMESLQN IWQHIVRHNK DEWKCQILDQ SGNVEQPKEV EYSCVTNEVR LKSSKKKRAE  180
EYEMEERSDT TTLKKARTTW STELHRKFLE AVDFYGINKA VPKKILERMN VAGLKREQIA  240
SHLQKHRLIQ RKNQSEQNNA CMGDPEATIG TMSNRFQPLA PISQFPAQNL AIWGRPATNS  300
PMFVPLADQR NHFSFENPML RYQGQQQMNN RNEQVNLLYG IPTAVEQNPS YLGMNTPVGW  360
ISQPQLQAHN MLRESNKFLS QNGLVHNPRD SMYNQVPQAS SSAIDCSLNQ NISFAGNTFP  420
MSGNSATSTT KEDVNSDDIF NELYQENVGS TLNTSYHSSI HHGIWSMEQS GQNVNSNTLI  480
AEAVLCSGQE NGHVNPVSRP HVSSYQSATF PEPSDQDLMS AMLEQQQQES DEPVAYAQFG  540
DDNEDALGNF PT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-16191252162ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769643.10.0two-component response regulator ARR2
TrEMBLA0A3Q7JEN60.0A0A3Q7JEN6_SOLLC; Uncharacterized protein
STRINGSolyc12g099380.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14508910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-95response regulator 2