PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen12g034390.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HB-other

Protein Properties

Length: 520aa MW: 58556.4 Da PI: 6.5192

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen12g034390.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.5e-18	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + R t+ qle Le+++++++yp+++++ e A++lgLte+qV+ WF+ rR k+k+ Sopen12g034390.1 20 KARIMKTPAQLEGLEKFYQEHKYPTESMKLEVAQSLGLTEKQVSGWFCHRRLKDKR 75 679999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-19	4	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.58E-16	13	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.888	16	76	IPR001356	Homeobox domain
SMART	SM00389	4.8E-19	18	80	IPR001356	Homeobox domain
CDD	cd00086	1.10E-15	20	75	No hit	No description
Pfam	PF00046	5.4E-16	20	75	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MEDSHEIHSE DDKGHVGKLK ARIMKTPAQL EGLEKFYQEH KYPTESMKLE VAQSLGLTEK 60 QVSGWFCHRR LKDKRLSSRE TNAKGRQDRS SGVIQDRGSG FRQDSCGSTK QGDDKYFDHR 120 EVESRRLTGP EVSTADVTRE ADTRYRAESN LMEDTPSGSS SSLRDARFSQ NVESFDMATS 180 RYLPGNEPTD LKCVKPRTGP SGYLKVKAKV ENASITAVKR QLGSLYRQDG PLLGVVFDQL 240 PRGAFESSVQ TPVDDPIYSG EPVPDLTPDF TKVDKRSNSC IGYGSISKIN SHGSDLDGAN 300 FKKSNKSSHP EYYINQKPDR NSSMHNGDRY YLGRNSSIEM RKDSGREVAV DGRCNYKLMA 360 KHDGAANPGS SGGFQSSYIG KVNREQVTAR FTSRDGLSLD IAEEEDLQCK PSNFVHKGSK 420 QHYCPERELS STVEKDYIHV DRPTVDEDYN EDHVKIQWEN EMRVAKRARD EEAPNHQEYV 480 RKASVTRMPS QTNHQISFAA EMSSSFSEDD KTEETSSFED

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MEDSHEIHSE DDKGHVGKLK ARIMKTPAQL EGLEKFYQEH KYPTESMKLE VAQSLGLTEK  60
QVSGWFCHRR LKDKRLSSRE TNAKGRQDRS SGVIQDRGSG FRQDSCGSTK QGDDKYFDHR  120
EVESRRLTGP EVSTADVTRE ADTRYRAESN LMEDTPSGSS SSLRDARFSQ NVESFDMATS  180
RYLPGNEPTD LKCVKPRTGP SGYLKVKAKV ENASITAVKR QLGSLYRQDG PLLGVVFDQL  240
PRGAFESSVQ TPVDDPIYSG EPVPDLTPDF TKVDKRSNSC IGYGSISKIN SHGSDLDGAN  300
FKKSNKSSHP EYYINQKPDR NSSMHNGDRY YLGRNSSIEM RKDSGREVAV DGRCNYKLMA  360
KHDGAANPGS SGGFQSSYIG KVNREQVTAR FTSRDGLSLD IAEEEDLQCK PSNFVHKGSK  420
QHYCPERELS STVEKDYIHV DRPTVDEDYN EDHVKIQWEN EMRVAKRARD EEAPNHQEYV  480
RKASVTRMPS QTNHQISFAA EMSSSFSEDD KTEETSSFED

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	0.0	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015059288.1	0.0	homeobox-DDT domain protein RLT1-like
TrEMBL	A0A3Q7JFP8	0.0	A0A3Q7JFP8_SOLLC; Uncharacterized protein
STRING	Solyc12g099760.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3436	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	1e-63	HB-other family protein