PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g034770.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 448aa    MW: 49155.6 Da    PI: 4.9765
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g034770.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.7e-11385430655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L+el+P+     +k  + a++L  A +YIk+L+
  Sopen12g034770.1 385 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDFAADYIKELE 430
                       689*********************7....688***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.5379429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-15382442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.41E-11383434No hitNo description
Gene3DG3DSA:4.10.280.105.3E-14384440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-12385435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-8385430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDHRSHQQQQ MTSGLTRYRS APSSYFTNLL SSNNPAGVSG GSGNCGYARD DFDQLLDPHA  60
SNSGIKQVFD RFVANIGPQD SNTDGLIDDT QQNQNPMSNI DVRSEVAAPM KQEHEAQQQQ  120
MNYQCQEQQS QNSQFVAPVK QEIAQQNSDY SLASQMNYQN HNATDFTSGM DNFGRYNRLN  180
HTKMDGGFGT GSSDSNLTRY NSSPAGFFAQ VNIENEYGAL RGIGSYGAGS GTNAAGEVSF  240
SNPSRFSSQT ALPSGQPTSS ALLAPISEFG AKSTEESRRG DESFGKGHKS DESYMAGFAM  300
PSWDDSQILT DDFLQVPEDD ESGSFSNVNA SDNQSSEGRA RPPTLLSHLS LPQTSAELSA  360
MEKLLQDSVP CKVRAKRGCA THPRSIAERV RRTRISERMR KLQELVPNMD KQTNTADMLD  420
FAADYIKELE TQVKALSETR SKCTCLHE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015061449.10.0transcription factor bHLH130-like
TrEMBLM1C7B50.0M1C7B5_SOLTU; Uncharacterized protein
STRINGSolyc12g100140.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.15e-58bHLH family protein