PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g034780.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 168aa    MW: 18527.9 Da    PI: 7.9328
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g034780.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.74.2e-43141141101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+C++dCv++pyfp+++p+kfa vhk+FGasnv k+l++l+e +r da+ss+vyeA+ar++dP+yG+vg+i++l++q+e l+++
  Sopen12g034780.1  14 PCAACKLLRRRCTQDCVFSPYFPSDEPHKFASVHKVFGASNVNKMLQELQEYQRGDAVSSMVYEANARINDPIYGCVGTISSLHHQIEFLHTQ 106
                       7******************************************************************************************** PP

            DUF260  94 lallkeel 101
                       la ++++l
  Sopen12g034780.1 107 LAIAQAQL 114
                       ***99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.32313114IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-4214111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKESGGRKQG ATSPCAACKL LRRRCTQDCV FSPYFPSDEP HKFASVHKVF GASNVNKMLQ  60
ELQEYQRGDA VSSMVYEANA RINDPIYGCV GTISSLHHQI EFLHTQLAIA QAQLVHMKMQ  120
QFSSMSGGGG TAANSSGNVW SPSSRHLQLE VHPEFEIYGS LQQPQINI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-44101157112LOB family transfactor Ramosa2.1
5ly0_B1e-44101157112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060787.11e-125LOB domain-containing protein 4-like
SwissprotQ9SHE93e-60LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A3Q7JE491e-115A0A3Q7JE49_SOLLC; Uncharacterized protein
STRINGSolyc12g100150.1.11e-115(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.14e-61LOB domain-containing protein 4