PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim00g012700.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family FAR1
Protein Properties Length: 241aa    MW: 27094.2 Da    PI: 10.3016
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim00g012700.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR128.45.5e-0992169790
                FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                         A+++GF++++++s+         + ++vC ++g+++  kk+   ++ ++ + ++gC  ++   ++k +++w ++ l+  HnH++ 
  Sopim00g012700.0.1  92 ANKAGFTIVTQRSSLI-----NPMFRLVCERSGTHKVPKKN--PKHARTGSRKCGCLFMISGYQSKqTKEWGLNILNGVHNHPME 169
                         8999999999876665.....34889***********9999..888889999********8766666***************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-692169IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MATTAIMVEN AEDVPGETKQ NFVENSGDVK PPKVEAKPNI DGAFVNVEAS KYVAGSGVLP  60
LQAHEVDTAR FFSDDVKSKD RDELLEWVRR QANKAGFTIV TQRSSLINPM FRLVCERSGT  120
HKVPKKNPKH ARTGSRKCGC LFMISGYQSK QTKEWGLNIL NGVHNHPMEP ALEGHIHSGR  180
LKEDDKKIVR DLIKSKMLSR NILIHLKNQR PHCMTNVKQV YMNVNKYGRQ IGVTRSRCNF  240
*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1498010.0AC149801.3 Medicago truncatula chromosome 2 clone mth2-32i15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A494G8Q31e-176A0A494G8Q3_SOLLC; Uncharacterized protein
STRINGSolyc00g012700.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2564722