PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim00g117450.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

SRS

Protein Properties

Length: 191aa MW: 22571.7 Da PI: 7.3123

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim00g117450.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	120.4	2.4e-37	108	180	4	78
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel 78 t+sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql++++++++++++++ kr++++ Sopim00g117450.0.1 108 ITISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSSLQQQEKEDNNKS--KRQKDD 180 689****************************************************988887755444..444433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.5E-34	109	178	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	7.4E-28	111	153	IPR006510	Zinc finger, lateral root primordium type 1

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MAEFFSLGEG GGREATNSQE YHHHHQETTN STHNWFLYKH HDQELSTYKG FELWQQQQQQ 60 SHHNEEEQNY QILRNPIINP FGLDIGPSHD HHHHHHHETN MMMRSSTITI SCQDCGNQAK 120 KDCQHMRCRT CCKSRGFQCQ THVKSTWVPA AKRRERQQQL SSLQQQEKED NNKSKRQKDD 180 SYTENFFPLC *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC331911	0.0	KC331911.1 Solanum lycopersicum expression of terpenoids 2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001316391.1	1e-136	transcription factor EXPRESSION OF TERPENOIDS 2
Swissprot	K4B6C9	6e-45	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A494G9V4	1e-140	A0A494G9V4_SOLLC; Uncharacterized protein
STRING	Solyc00g117450.2.1	1e-141	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	4e-29	SHI-related sequence 5

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]