PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g008880.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 200aa    MW: 22920.4 Da    PI: 10.3909
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g008880.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.71.8e-15126176255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVrw++ +grW+AeIr     g k  +r +lg+f+t  eAa a+++a+ +++g
  Sopim01g008880.0.1 126 KYRGVRWRE-SGRWAAEIRY----GrKEaRRRWLGTFDTSREAALAYDKAAIEIKG 176
                         8********.7********9....54457***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.83E-23126182No hitNo description
SMARTSM003803.0E-22126190IPR001471AP2/ERF domain
PROSITE profilePS5103219.651126184IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-18126183IPR016177DNA-binding domain
PfamPF008471.5E-11126176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-23126183IPR001471AP2/ERF domain
PRINTSPR003671.3E-6127138IPR001471AP2/ERF domain
PRINTSPR003671.3E-6150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MCSLMDILNF FFVLFSFNEA MTTKDELKKN EALEKSSKVV RVKKFTKQLG KSSIIMPHVI  60
RIYMQDNDAT DSSSDDEENL QGGKSKRNKI ICNEIIIEKK NTKVVSKRMS SKKKRDKKLL  120
LENVEKYRGV RWRESGRWAA EIRYGRKEAR RRWLGTFDTS REAALAYDKA AIEIKGANAL  180
TNILDPPPKE STPSTPCHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-14125182158ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A8e-141261831471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004228881.31e-144ethylene-responsive transcription factor ERF069-like
TrEMBLA0A3Q7ESJ41e-125A0A3Q7ESJ4_SOLLC; Uncharacterized protein
STRINGSolyc01g008880.1.11e-144(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.12e-20cytokinin response factor 5