PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g009510.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 191aa    MW: 21312.7 Da    PI: 7.6031
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g009510.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.66.2e-14112155548
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                         kr+rr+++NR +A+rsR+RK+a+++eLe   ++   eN++Lk+ 
  Sopim01g009510.0.1 112 KRQRRMIRNRASAQRSRARKQAYTAELEAQLEKVRDENERLKSI 155
                         9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.8E-9107172IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.864110154IPR004827Basic-leucine zipper domain
PfamPF001702.2E-11112155IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-11112154No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-14112154No hitNo description
CDDcd147071.27E-15112153No hitNo description
PROSITE patternPS000360115130IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDVSEEESVG CYKVQPPQVQ EGFSDNLPDS ASLNELFKHF YQPEGHDVGS NSTHEGFGLS  60
YGIDQIFEQA ADVIAPARGN AQNLNSDGSD AAGGGNRRRR AATIEQETLM EKRQRRMIRN  120
RASAQRSRAR KQAYTAELEA QLEKVRDENE RLKSIVLIDD VRFLILQSSL NSPSSPSPTP  180
NFRKIIYKKK *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-127HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-127HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010326740.11e-113ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBLA0A3Q7EAF81e-111A0A3Q7EAF8_SOLLC; Uncharacterized protein
STRINGSolyc01g009510.1.11e-138(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1843744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44460.18e-07bZIP family protein