PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g009840.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 252aa    MW: 28678.7 Da    PI: 6.4348
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g009840.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS74.61.8e-238316276153
                GRAS  76 eelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg 153
                          + ++l+l+++v Pi kf h+t N+ +++a+eg+++  iiDfd +q lQWp+L+q+L sR ++p   ++RiTg+g+++++
  Sopim01g009840.0.1  83 FSSTVLRLLNQVRPISKFIHFTSNEIMVRAFEGKDQAYIIDFDTEQVLQWPNLFQSLVSRHKPPSqiHVRITGIGESKQD 162
                         44567789*****************************************************9987789*******96644 PP
2GRAS33.36.4e-11192231287326
                GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
                         +el++r+i+n++a eg++ +erhe ++kWr+ +e+ GF+ 
  Sopim01g009840.0.1 192 EELFARDIRNIIAREGRDMIERHEYFGKWRKLMEQGGFQM 231
                         567***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.1291251IPR005202Transcription factor GRAS
PfamPF035147.4E-2184162IPR005202Transcription factor GRAS
PfamPF035142.2E-8192231IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MLTGCSSSLD LPQAHHLPNN QWDDDAAELI SLLCVEAIGS RNVTGVNQLI ARLGRLAYLR  60
GSPDLVSNFH IIPTQVLDCL DVFSSTVLRL LNQVRPISKF IHFTSNEIMV RAFEGKDQAY  120
IIDFDTEQVL QWPNLFQSLV SRHKPPSQIH VRITGIGESK QDLGIDLWMH HVKEGENVAV  180
FHWTALVGFK TEELFARDIR NIIAREGRDM IERHEYFGKW RKLMEQGGFQ MHRDYRKGTA  240
SESNSVEDVL I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-163416326172Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018828643.15e-61PREDICTED: scarecrow-like protein 28 isoform X2
SwissprotQ9CAN37e-39SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A3Q7E9R01e-146A0A3Q7E9R0_SOLLC; Uncharacterized protein
STRINGSolyc01g009840.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2598922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.13e-41GRAS family protein