PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g010300.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 89aa    MW: 10052.7 Da    PI: 10.7877
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g010300.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.43.3e-071563149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        k i +k +r v f k  +   K A+ L   ++a v ++ fs+tgk y y
  Sopim01g010300.0.1 15 KMITSKVKRMVLFKKLWANFVKEAHDLYMTTGAHVTIVAFSPTGKAYAY 63
                        6799******************************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.325767IPR002100Transcription factor, MADS-box
SMARTSM004320.0025766IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-15981IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-7929IPR002100Transcription factor, MADS-box
PfamPF003192.3E-121763IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-72944IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-74465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MAQTKILRRQ KIKRKMITSK VKRMVLFKKL WANFVKEAHD LYMTTGAHVT IVAFSPTGKA  60
YAYDSSNNFD TIERFLNDSK ASAIEGGH*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2433601e-147AC243360.7 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-34i22 map 1, complete sequence.
GenBankAC2438641e-147AC243864.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-18h5 map 1, complete sequence.
GenBankHG9755131e-147HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064763.11e-41uncharacterized protein LOC107009984
STRINGSolyc01g010300.1.11e-59(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1490855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.13e-11AGAMOUS-like 20