PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim01g010600.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HD-ZIP

Protein Properties

Length: 244aa MW: 28291.7 Da PI: 6.5837

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim01g010600.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.9	7.4e-18	76	127	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++Le Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k Sopim01g010600.0.1 76 RRLNMEQVKTLEMNFELGNKLESERKIQLARALGLQPRQVAIWFQNRRARWK 127 57899**********************************************9 PP
2	HD-ZIP_I/II	120.3	1e-38	74	165	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 k rrl+ eqvk+LE++Fe +kLe+erK +lar+Lglqprqva+WFqnrRAR+ktkqlEk y++Lkr++d +k++ne+L +++++L++e++ Sopim01g010600.0.1 74 KIRRLNMEQVKTLEMNFELGNKLESERKIQLARALGLQPRQVAIWFQNRRARWKTKQLEKHYDVLKREFDVIKSQNEALLAHNNKLQAEIM 164 669************************************************************************************9997 PP HD-ZIP_I/II 93 e 93 + Sopim01g010600.0.1 165 T 165 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.228	69	129	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.03E-18	70	131	IPR009057	Homeodomain-like
SMART	SM00389	6.4E-17	72	133	IPR001356	Homeobox domain
CDD	cd00086	1.31E-14	73	130	No hit	No description
Pfam	PF00046	3.1E-15	76	127	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.9E-18	77	136	IPR009057	Homeodomain-like
PRINTS	PR00031	1.0E-5	100	109	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	104	127	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.0E-5	109	125	IPR000047	Helix-turn-helix motif
Pfam	PF02183	7.2E-14	129	168	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MTSCNNEMDF FPTNLMQHTP HEDNHQDHFH GVTSFLGKRS MSFSSKCDDQ NHGDQEDVLS 60 DDGTHHEAIL REKKIRRLNM EQVKTLEMNF ELGNKLESER KIQLARALGL QPRQVAIWFQ 120 NRRARWKTKQ LEKHYDVLKR EFDVIKSQNE ALLAHNNKLQ AEIMTLKNGK GPTESINLNK 180 ETDQGSICST RSENSTEIMK LQCNNMKLMD QTVKEETLSN IFCGIDDNSS GFWPWLDQQP 240 HFN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	129	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC245835	0.0	AC245835.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-8i3 map 1, complete sequence.
GenBank	AC246709	0.0	AC246709.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-58g10 map 1, complete sequence.
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004228394.1	0.0	homeobox-leucine zipper protein ATHB-13 isoform X2
Swissprot	Q8LC03	2e-77	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	M0ZJU9	1e-160	M0ZJU9_SOLTU; Uncharacterized protein
STRING	Solyc01g010600.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA848	24	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	8e-80	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]