PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g044520.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 172aa    MW: 19382 Da    PI: 7.5011
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g044520.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.61.4e-40171171101
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+C +dC l pyfp ++p kf ++hk+FGasn++k+lk+lp ++r da++slvyeA+ar+rdP+yG++gvi++l+ q+ +l+
  Sopim01g044520.0.1  17 PCAACKFLRRRCLEDCLLKPYFPPNEPMKFIVAHKIFGASNIIKVLKDLPATQRGDAVNSLVYEANARMRDPIYGSAGVISHLHDQMTKLQ 107
                         7****************************************************************************************** PP

              DUF260  92 aelallkeel 101
                         a++al+++++
  Sopim01g044520.0.1 108 AQVALAQAQI 117
                         *****99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.22716117IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-3917114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MADYSSCSTE NRNLFTPCAA CKFLRRRCLE DCLLKPYFPP NEPMKFIVAH KIFGASNIIK  60
VLKDLPATQR GDAVNSLVYE ANARMRDPIY GSAGVISHLH DQMTKLQAQV ALAQAQISNL  120
QSQNANLMTL IPKQQSLSDH HYKFQNSTPL SYDDNTEIWH LGDTTWDSFW S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-381611710111LOB family transfactor Ramosa2.1
5ly0_B2e-381611710111LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384520.0AC238452.1 Solanum lycopersicum chromosome 1 clone C01HBa0133B03, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010318580.11e-128LOB domain-containing protein 1-like
SwissprotQ9LQR02e-54LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A3Q7ED821e-127A0A3Q7ED82_SOLLC; Uncharacterized protein
STRINGSolyc01g044520.1.11e-127(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.19e-51LOB domain-containing protein 1