PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g060300.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 212aa    MW: 23138.6 Da    PI: 9.3583
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g060300.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.86.1e-231459247
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                        +i+n++n qvt+skRr+g++KKA+ELS+LC+a+va++ fs+++k+y
  Sopim01g060300.0.1 14 KIQNQTNLQVTLSKRRAGLFKKASELSTLCGANVAIVAFSPSNKVY 59
                        79******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-30564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.661565IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-26680IPR002100Transcription factor, MADS-box
CDDcd002658.12E-33673No hitNo description
PRINTSPR004042.2E-18727IPR002100Transcription factor, MADS-box
PfamPF003194.4E-231459IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-182742IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-184263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRKPNGRKKI EIAKIQNQTN LQVTLSKRRA GLFKKASELS TLCGANVAIV AFSPSNKVYA  60
CGHPSVESIV DKFIGENPPP ETDDPNPIIV MTADTIPKGS PFTSMQEFSL GIDFGKLCQI  120
TCVPQLIESC PNSSILQIWT DYHLGSTNEL AHQALLDLGG YRLVILPLHR AGTVRCSVKP  180
ASRSPFHFRN PSSHSFDWIA RPNSMLGQGR P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A1e-16689184Myocyte-specific enhancer factor 2A
3kov_B1e-16689184Myocyte-specific enhancer factor 2A
3kov_I1e-16689184Myocyte-specific enhancer factor 2A
3kov_J1e-16689184Myocyte-specific enhancer factor 2A
3p57_A1e-16689184Myocyte-specific enhancer factor 2A
3p57_B1e-16689184Myocyte-specific enhancer factor 2A
3p57_C1e-16689184Myocyte-specific enhancer factor 2A
3p57_D1e-16689184Myocyte-specific enhancer factor 2A
3p57_I1e-16689184Myocyte-specific enhancer factor 2A
3p57_J1e-16689184Myocyte-specific enhancer factor 2A
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-149HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGSolyc01g060300.1.11e-156(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1846024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-29AGAMOUS-like 62