PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g060370.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 98aa    MW: 10842.2 Da    PI: 4.345
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g060370.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.34.1e-1115744099
                        ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE-S CS
                  B3 40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfrk 99
                        + sg++W++ +   + + +y +++GWk F ++n+LkegD +vF+l+  + ++ e++++++r+
  Sopim01g060370.0.1 15 TYSGKKWNLFF--GGAKTKYKFSTGWKIFGDDNNLKEGDGIVFELSeCNpDNVEFKIQILRE 74
                        569********..99999**************************997777888888888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.802175IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-111474IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-81573IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-101675IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-101773No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MNKELPFAGG PGVLTYSGKK WNLFFGGAKT KYKFSTGWKI FGDDNNLKEG DGIVFELSEC  60
NPDNVEFKIQ ILRENFPAEL VPEDVEGINT DNPIIIN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-161HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068102.15e-64B3 domain-containing protein Os04g0386900-like
TrEMBLA0A3Q7EF649e-63A0A3Q7EF64_SOLLC; Uncharacterized protein
STRINGSolyc01g060370.1.11e-63(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-08B3 family protein