PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g060490.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 172aa    MW: 18569.7 Da    PI: 8.5827
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g060490.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.52.1e-1968101134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C+nCg+ kTplWR+gp g+k+LCnaCG++ rkk+
  Sopim01g060490.0.1  68 CVNCGAMKTPLWRSGPAGPKSLCNACGIRSRKKK 101
                         ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.6116298IPR000679Zinc finger, GATA-type
SMARTSM004012.6E-1262112IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-1365102No hitNo description
Gene3DG3DSA:3.30.50.103.6E-1667102IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.1E-1668102IPR000679Zinc finger, GATA-type
PROSITE patternPS0034406893IPR000679Zinc finger, GATA-type
CDDcd002023.72E-1468102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MDLTDKVIGS EATEMTTPEV MISSEMEVKA AEMMISPEIK AKAPEVISSE IQMKTPEVIS  60
SEIQMKNCVN CGAMKTPLWR SGPAGPKSLC NACGIRSRKK KRDLLGLNKD EKKTKKSSAN  120
SASSSNVDKK KKKKICAVKN ADAIPIHWTD LDDVEQAAFL LMCLSCSSVC A*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-141HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010318767.11e-120GATA transcription factor 16
TrEMBLA0A3Q7EYP71e-108A0A3Q7EYP7_SOLLC; Uncharacterized protein
STRINGSolyc01g060490.2.11e-119(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-19GATA transcription factor 16