PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g081400.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 168aa    MW: 18428.8 Da    PI: 5.0581
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g081400.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.19.9e-11571421197
                         HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE CS
                  B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvf 97 
                           s  ++lpkk  +e  +  ++ +   + +   ++W++ +   k++ ++ ++  W++Fv++n+LkegD +vF+l+  + s+ e++v+++
  Sopim01g081400.0.1  57 KPSYSMYLPKKMRSELPSAGARAVP-AVLTCGQKKWDMSYGGVKSGHKFCIE--WRKFVDDNNLKEGDGLVFELVeCSaSKIEFRVQIL 142
                         5556677777776666333223322.3445577*******656666667777..*******************8855567777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-1443142IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-1344142IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.27847145IPR003340B3 DNA binding domain
CDDcd100179.81E-1350143No hitNo description
SMARTSM010193.5E-551145IPR003340B3 DNA binding domain
PfamPF023629.7E-955142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MESGSSFGRV SNHSHSYSTM KQPEIESSGI TEIDNGEYWP LSGKPYVDLI LTKTGVKPSY  60
SMYLPKKMRS ELPSAGARAV PAVLTCGQKK WDMSYGGVKS GHKFCIEWRK FVDDNNLKEG  120
DGLVFELVEC SASKIEFRVQ ILSGDFPAEL KPEDEEGANS DNPILLG*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-178HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-178HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229533.11e-121B3 domain-containing protein Os06g0112300
RefseqXP_015072506.11e-121B3 domain-containing protein Os06g0112300-like
TrEMBLA0A3Q7EI371e-120A0A3Q7EI37_SOLLC; Uncharacterized protein
STRINGSolyc01g081400.2.11e-121(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-08B3 family protein