PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g090320.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 187aa    MW: 21442.4 Da    PI: 10.4959
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g090320.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.6e-1788138255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y GVr++  +g + AeIrdp   + k +r +lg++ t+e+Aa a+++a+ k++g
  Sopim01g090320.0.1  88 RYIGVRRRQ-WGTFTAEIRDP---NkKGARLWLGTYETPEDAALAYDQAAFKIRG 138
                         699***887.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.33E-2888148No hitNo description
PfamPF008478.5E-1288138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-3088147IPR001471AP2/ERF domain
SMARTSM003802.4E-3288152IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-2188147IPR016177DNA-binding domain
PROSITE profilePS5103222.41888146IPR001471AP2/ERF domain
PRINTSPR003673.0E-1089100IPR001471AP2/ERF domain
PRINTSPR003673.0E-10128148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MNINMKFSLS DFDFLESVKQ HLLNDFDFFK YFSPMNLNNV ELPNSAISSL GSSLSIESHE  60
KFEYEEEIIK GPNMVVARQK NTPEDWRRYI GVRRRQWGTF TAEIRDPNKK GARLWLGTYE  120
TPEDAALAYD QAAFKIRGSR ARVNFPHLIG SNMPKPARLK VRHHTSSLKP SSFSSTSLKN  180
GIRKKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2589152669ATERF1
3gcc_A2e-2589152669ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019071299.21e-137ethylene-responsive transcription factor 2-like
TrEMBLA0A3Q7F3Y11e-136A0A3Q7F3Y1_SOLLC; Uncharacterized protein
STRINGSolyc01g090320.2.11e-136(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-34ethylene-responsive element binding factor 13