PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim01g091420.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 272aa MW: 28025.9 Da PI: 7.5992

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim01g091420.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.2	3.2e-39	40	140	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ ++++eA+ar+rdPvyG+v++i++lq+q+++l Sopim01g091420.0.1 40 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVLTICFEAQARLRDPVYGCVAHIFALQHQVANL 130 7*********************9989*********************************************************** PP DUF260 91 kaelallkee 100 +ael++l+++ Sopim01g091420.0.1 131 QAELSYLQAH 140 ***99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.668	39	141	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-38	40	138	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010089	Biological Process	xylem development
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MSSNNHSSST GGVSAPGGGV TSGSTSSGGG SGGGGGGGGP CGACKFLRRK CVAGCIFAPY 60 FDSEQGAAHF AAVHKVFGAS NVSKLLLHIP VHKRLDAVLT ICFEAQARLR DPVYGCVAHI 120 FALQHQVANL QAELSYLQAH LTTLELPTPP PLPPPPPPPP QQPQTMLHQP SLTIADLPTA 180 GPSLPAAYDL SSLFDPMVIQ PSWAMQQQPR PPPPLPLDPR HFGGARAPMD MSPSTGGGGG 240 DLQELARELL HRHGSATVPC TESSALPPQT K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-36	36	141	7	111	LOB family transfactor Ramosa2.1
5ly0_B	5e-36	36	141	7	111	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004231166.1	0.0	LOB domain-containing protein 30
Swissprot	O81323	2e-78	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A3Q7EKM9	0.0	A0A3Q7EKM9_SOLLC; Uncharacterized protein
STRING	Solyc01g091420.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	1e-68	LBD family protein

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]