PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g095030.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 332aa    MW: 37039 Da    PI: 9.9612
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g095030.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-1368112147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Sopim01g095030.0.1  68 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 112
                         789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-1662118IPR009057Homeodomain-like
PROSITE profilePS5129415.40863117IPR017930Myb domain
TIGRFAMsTIGR015571.5E-1866115IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-666118IPR009057Homeodomain-like
SMARTSM007175.3E-1167115IPR001005SANT/Myb domain
PfamPF002492.7E-1168112IPR001005SANT/Myb domain
CDDcd001672.05E-870113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MVSVYPTPPG QDFHYMGDPM KTGLMGLHPV QSGTSIHGNL NLDSNTGLVV SDDHSKKTRK  60
PYTITKSRES WTEQEHDKFL EALQLFDRDW KKIEAFVGSK TVIQIRSHAQ KYFLKVQKSG  120
TSEHVPPPRP KRKASHPYPQ KAPKKVISQV GSIQFQPPGA LPVPGFGIGP DPLSVPGNTI  180
NFSPWTYDNV PAISTIQTRK DDAQLSSGGV KQNCSSSSNE NNPRINKTKE SNDQNESQKQ  240
MKVMPDFAQV YSFIGSVFDP STRDHLQRLK KMDPIDIQTA LMLMKNLSFN LSSPEFEDHR  300
RMLSSYGLGA EKDKMDLPIK SDFRGNAIRA I*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340693.10.0R1-MYB type transcription factor ARS1
SwissprotQ8H0W37e-98RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A3Q7EM190.0A0A3Q7EM19_SOLLC; Uncharacterized protein
STRINGSolyc01g095030.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-100MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]